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The map label for this gene is yafK [H]

Identifier: 49476284

GI number: 49476284

Start: 1888621

End: 1889364

Strand: Reverse

Name: yafK [H]

Synonym: BH16330

Alternate gene names: 49476284

Gene position: 1889364-1888621 (Counterclockwise)

Preceding gene: 49476285

Following gene: 49476279

Centisome position: 97.84

GC content: 38.84

Gene sequence:

>744_bases
ATGATATTCAAAAGATTCCTCATAATATACGTTTTGTTTGCAACTGGAATATTAACAGCATGTGAGGGACGATTGCCAGC
TTCTATTCGTGCTAAGGTTGAACAGCCACTTCCACGAGAAGTTCAAAATAGAATGGTTTTGTATAATGTTGATCCTTATG
CGCCGATTATGATGCGGTTTTTTAAGGAAGAAAATATTGCCGAAATTTGGAAACAGTCTCGTTCAGGATCTTTTGTGCTG
ATAGCCCGCTATGACATTTGCAAATGGTCAGGTCAGCTTGGACCTAAATATAAGGAAGGGGATTTTCAGACACCAGAAGG
TTTTTATACTATTAGTGCAAGTCAAATGAATCCTTATTCGAAATATTATCTTTCCTTTAATATAGGATTTCCCAACTTGT
ATGATCAAGCTCATGGTCGCACAGGGAGCAATCTTATGGTGCACGGTTCTTGCTTTTCTGCTGGTTGTTATTCCATGAGC
GATAAAAATATGGCACAAATTTATGCTTTTGCACGGGATGCTTTTAGAGGTGGGCAGCGAAAATTTCAGTTGCAGGCTTT
TCCTTTCCGCATGACTGATGCTAACATGGCGCGTCATAGCTCTGACCCTCATTATCAATTCTGGATGATGCTTAAAAAAG
GCTACGATCTCTTTGAGAAGAATCGTAAGCCTCCAACGGTTGATGTTTATGAAAAGCGTTATGTTTTTAATACTGGTAAA
ACTGTTGTTTCCTTAAAACCATGA

Upstream 100 bases:

>100_bases
GGTGATGTTCTTAAACAAGAACGTCGGGAAAAATATCTTCAAATTGGCCGTTCTCTAGCATAACTTGTTTTTGTGAGGGG
TTGAATAGGAGTTTTATTCG

Downstream 100 bases:

>100_bases
GTCTTATTTTATCGTAAAATAGAGATTTTTTGCCTCTTTCAGAATGTTTTGTTCTTCTAAAGAGTTACATGTGAACATTT
ATGCTGGTTTTTAAATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIFKRFLIIYVLFATGILTACEGRLPASIRAKVEQPLPREVQNRMVLYNVDPYAPIMMRFFKEENIAEIWKQSRSGSFVL
IARYDICKWSGQLGPKYKEGDFQTPEGFYTISASQMNPYSKYYLSFNIGFPNLYDQAHGRTGSNLMVHGSCFSAGCYSMS
DKNMAQIYAFARDAFRGGQRKFQLQAFPFRMTDANMARHSSDPHYQFWMMLKKGYDLFEKNRKPPTVDVYEKRYVFNTGK
TVVSLKP

Sequences:

>Translated_247_residues
MIFKRFLIIYVLFATGILTACEGRLPASIRAKVEQPLPREVQNRMVLYNVDPYAPIMMRFFKEENIAEIWKQSRSGSFVL
IARYDICKWSGQLGPKYKEGDFQTPEGFYTISASQMNPYSKYYLSFNIGFPNLYDQAHGRTGSNLMVHGSCFSAGCYSMS
DKNMAQIYAFARDAFRGGQRKFQLQAFPFRMTDANMARHSSDPHYQFWMMLKKGYDLFEKNRKPPTVDVYEKRYVFNTGK
TVVSLKP
>Mature_247_residues
MIFKRFLIIYVLFATGILTACEGRLPASIRAKVEQPLPREVQNRMVLYNVDPYAPIMMRFFKEENIAEIWKQSRSGSFVL
IARYDICKWSGQLGPKYKEGDFQTPEGFYTISASQMNPYSKYYLSFNIGFPNLYDQAHGRTGSNLMVHGSCFSAGCYSMS
DKNMAQIYAFARDAFRGGQRKFQLQAFPFRMTDANMARHSSDPHYQFWMMLKKGYDLFEKNRKPPTVDVYEKRYVFNTGK
TVVSLKP

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=237, Percent_Identity=41.3502109704641, Blast_Score=192, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28661; Mature: 28661

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKRFLIIYVLFATGILTACEGRLPASIRAKVEQPLPREVQNRMVLYNVDPYAPIMMRF
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCEEEEECCCCHHHHHHH
FKEENIAEIWKQSRSGSFVLIARYDICKWSGQLGPKYKEGDFQTPEGFYTISASQMNPYS
HCCCCHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCE
KYYLSFNIGFPNLYDQAHGRTGSNLMVHGSCFSAGCYSMSDKNMAQIYAFARDAFRGGQR
EEEEEEECCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
KFQLQAFPFRMTDANMARHSSDPHYQFWMMLKKGYDLFEKNRKPPTVDVYEKRYVFNTGK
EEEEEECCEEECCCHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEEECCEEEEECCC
TVVSLKP
EEEEECC
>Mature Secondary Structure
MIFKRFLIIYVLFATGILTACEGRLPASIRAKVEQPLPREVQNRMVLYNVDPYAPIMMRF
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCEEEEECCCCHHHHHHH
FKEENIAEIWKQSRSGSFVLIARYDICKWSGQLGPKYKEGDFQTPEGFYTISASQMNPYS
HCCCCHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCE
KYYLSFNIGFPNLYDQAHGRTGSNLMVHGSCFSAGCYSMSDKNMAQIYAFARDAFRGGQR
EEEEEEECCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
KFQLQAFPFRMTDANMARHSSDPHYQFWMMLKKGYDLFEKNRKPPTVDVYEKRYVFNTGK
EEEEEECCEEECCCHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEEECCEEEEECCC
TVVSLKP
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]