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The map label for this gene is rimM

Identifier: 49476238

GI number: 49476238

Start: 1825451

End: 1825993

Strand: Reverse

Name: rimM

Synonym: BH15830

Alternate gene names: 49476238

Gene position: 1825993-1825451 (Counterclockwise)

Preceding gene: 49476241

Following gene: 49476237

Centisome position: 94.56

GC content: 41.25

Gene sequence:

>543_bases
ATGAAATATAATAGAGAAAAGCTTAAAAATAAAGTCTGTCTTGCCATTATTGGTATGCCCCATGGCATAAAGGGTGATGT
TTTGCTGAAGATCTTGAGTTCTGAACCACAGCGTTTAAAAACTTATGGTACCCTTTATGATGATAGGGGACATTCTTATG
AAATTGTAATGCTTCGCATGCAAAAAAAGAACGCGATTGTGCATTTTAAAGGGGTTGAGGATCGCAGTGCTGCTGAGGCT
TTAAGGGGTATTCATCTTTATGTTGCCCGCGATCAATTGGTGGATGATTTGACTGAGGATGAATTTTATCAGGTAGATTT
AATAGGGCTTCGTGTTCAAGATTGTACCGGTCGAATCCTCGGTGAGGTGAGTGGTCTTTTTAATTTCGGCGCTGGTGATT
TGCTTGAAATGCGTTTAAATACGGGTAAAACCGTGCTTATCCCTTTTAGCAAGGCGGCGGTGTTAGAGGTTTGCATCGCT
TCTGGTTTTCTTGTTGTTGATCCAGTGGCTGCTGGTTTAAGTGATGGGGGAGAAAATACTTGA

Upstream 100 bases:

>100_bases
TTTTCTTTGTTACCAAGAAAGGTCTTTCTGGAAGATTTTTAATATGGCAACAAGAGTTAATAGAAAGCTACAAGTGAGGG
ATTCGTTTTTAGAAGATGAT

Downstream 100 bases:

>100_bases
AGGGAAAATGGCTTGAACCAAAAAATGAAGGTGAAAAGTGAAGACATACAAGGATGTGTCTCTTAACACGTGTGTAGTAC
TTTGATCATAACATGTTTCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKYNREKLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRMQKKNAIVHFKGVEDRSAAEA
LRGIHLYVARDQLVDDLTEDEFYQVDLIGLRVQDCTGRILGEVSGLFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIA
SGFLVVDPVAAGLSDGGENT

Sequences:

>Translated_180_residues
MKYNREKLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRMQKKNAIVHFKGVEDRSAAEA
LRGIHLYVARDQLVDDLTEDEFYQVDLIGLRVQDCTGRILGEVSGLFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIA
SGFLVVDPVAAGLSDGGENT
>Mature_180_residues
MKYNREKLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRMQKKNAIVHFKGVEDRSAAEA
LRGIHLYVARDQLVDDLTEDEFYQVDLIGLRVQDCTGRILGEVSGLFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIA
SGFLVVDPVAAGLSDGGENT

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BARHE (Q6G1R8)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_034279.1
- ProteinModelPortal:   Q6G1R8
- SMR:   Q6G1R8
- GeneID:   2864804
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH15830
- NMPDR:   fig|283166.1.peg.1407
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q6G1R8
- ProtClustDB:   PRK00122
- BioCyc:   BHEN283166:BH15830-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19842; Mature: 19842

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYNREKLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRM
CCCCHHHHCCCEEEEEEECCCCCCHHHHHEECCCCCHHHHHHCCEECCCCCEEEEEEEEE
QKKNAIVHFKGVEDRSAAEALRGIHLYVARDQLVDDLTEDEFYQVDLIGLRVQDCTGRIL
ECCCEEEEEECCCCHHHHHHHCCEEEEEEHHHHHHHCCCCCEEEEEEEEEEEECHHHHHH
GEVSGLFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIASGFLVVDPVAAGLSDGGENT
HHHHHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCEEECHHHHCCCCCCCCC
>Mature Secondary Structure
MKYNREKLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRM
CCCCHHHHCCCEEEEEEECCCCCCHHHHHEECCCCCHHHHHHCCEECCCCCEEEEEEEEE
QKKNAIVHFKGVEDRSAAEALRGIHLYVARDQLVDDLTEDEFYQVDLIGLRVQDCTGRIL
ECCCEEEEEECCCCHHHHHHHCCEEEEEEHHHHHHHCCCCCEEEEEEEEEEEECHHHHHH
GEVSGLFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIASGFLVVDPVAAGLSDGGENT
HHHHHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCEEECHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA