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The map label for this gene is 49476040

Identifier: 49476040

GI number: 49476040

Start: 1558880

End: 1559257

Strand: Reverse

Name: 49476040

Synonym: BH13590

Alternate gene names: NA

Gene position: 1559257-1558880 (Counterclockwise)

Preceding gene: 49476041

Following gene: 49476038

Centisome position: 80.75

GC content: 41.01

Gene sequence:

>378_bases
GTGGGTATTCCGAAATTCCGGGAGATTTTGCTATGTCCAGGTGCTACAAGCACTAAAAGCAAAATGCTGATTCGAGGTCA
GTGTTTTCAAGCTCCCGGAATACCAATGCGAGGGCGCTCGCAACCGGTGGGGGAAATGCAAGCCAAAAATCTTCATCAAG
CAAAAAATCTTTATAATGACATTTTCGTGGGCAAAAAAATTCGCTTTAGGCGAAAAATGCTGAAAATGTCTCAAAAAACA
TTGGCTGACCACTTGAGGGTAAGCTCCCAACAAATTCAAAAATATGAAACAGGATTAAATCGTGTGAGCGCGGGGTGTTT
AAAGGAAATTGCTGATATCCTGAATGTTTCTATTGCCTTTTTTATGCCGATTTCTTAA

Upstream 100 bases:

>100_bases
CAATTACTTTATGATTTAAAAGGTATTTTGGTCGCGTACGCAACGACCAATAGAGCCTTGAAAACCCGAAACCTCGATAC
ATAAGAATGAACCCACTGAT

Downstream 100 bases:

>100_bases
CACAACAAAAGCACCCCACCCAGCATGATGAAATCATCTCGAGCAGAGAGGAATACCTGCTTTTAAAAAGATTTCGAGTT
CTCACCTCAGTAAAACAAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MGIPKFREILLCPGATSTKSKMLIRGQCFQAPGIPMRGRSQPVGEMQAKNLHQAKNLYNDIFVGKKIRFRRKMLKMSQKT
LADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIAFFMPIS

Sequences:

>Translated_125_residues
MGIPKFREILLCPGATSTKSKMLIRGQCFQAPGIPMRGRSQPVGEMQAKNLHQAKNLYNDIFVGKKIRFRRKMLKMSQKT
LADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIAFFMPIS
>Mature_124_residues
GIPKFREILLCPGATSTKSKMLIRGQCFQAPGIPMRGRSQPVGEMQAKNLHQAKNLYNDIFVGKKIRFRRKMLKMSQKTL
ADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIAFFMPIS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 14097; Mature: 13966

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIPKFREILLCPGATSTKSKMLIRGQCFQAPGIPMRGRSQPVGEMQAKNLHQAKNLYND
CCCCCCHHEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIAF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
FMPIS
EECCC
>Mature Secondary Structure 
GIPKFREILLCPGATSTKSKMLIRGQCFQAPGIPMRGRSQPVGEMQAKNLHQAKNLYND
CCCCCHHEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIAF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
FMPIS
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]