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The map label for this gene is ddpA [H]

Identifier: 49475934

GI number: 49475934

Start: 1355942

End: 1357579

Strand: Reverse

Name: ddpA [H]

Synonym: BH12180

Alternate gene names: 49475934

Gene position: 1357579-1355942 (Counterclockwise)

Preceding gene: 49475936

Following gene: 49475933

Centisome position: 70.3

GC content: 38.58

Gene sequence:

>1638_bases
ATGAGAAAGAAAGGGATGTTGAAGAATTTTTGTATTTTATTAGGGGCAATTGGGTGTTTGAATATATTCATACCAATAGC
ACTTGGTGCATCATCTAAAGATAGATTGGTGATGGCTTGGAATATTGATTCAATTAGCAGTTTTGATCCAGCGCAATCGG
TTGAGGTTGTAACAAGTGAATTGTTGACAAATATTTGTAGTGCCTTGGTGCAATATGATCGGAATGATCCTACAAAAGTG
CGTCCTGCTATGGCTCAGTCGTGGAATGTTTTTGATGGCGGAACGAGAATTGTTTTTCATCTTCGTCATGATTTAAAGTT
TAATGATGGAAGGAAGGCTACTGCGCAAGATCTCGCTTGGTCAATGCAGCGTATTGTTAAGTTAGGGTTGGGCTATGCCC
AATCTTTGATAAACTATGGGTTTACTAAAGACAATGTCGAAACAAATATTCAAGCTCTTGACGATAAAACTTTACAACTA
AAATTGGATAAGCCTTATCCTATCCAACTTGTCTTGACTGTGATTGGACAGTCTTATGCCTCTGCTTTGCTTGATCGCCA
AACACTTGAAGCAAAGAGTGTTGATGGCGATATGGGCAATGAATATTTAGCAACGCATTCGGCTTGTGTTGGCCCTTATA
AATTAGAGCGTTGGATTCCAGGGGAGAAAGTTGTCTTACAGGCTAGCCAATATTATTGGGGAGATGACGTACCCAAAACT
AAACAGATTGTAGTGCAGCATGTCGCTGAATCAGCAAGCCAGAGATTGCTTTTGGAAAAAGGTGATGTGGATATAGCGCG
TGATCTCTCTTCAGAGGATATCTTGGATATTGAAAAAAAAGGCGGGCCTGTCAAAATTAGTCGTGTTTTACGACCGCAGT
CTATTTATTTATCGTTGAACAACAAAAATGCAATTTTTGCTAACGAAAAAGTAAGATTGGCACTTCGTTATTTGGTTGAT
TACGAGAGCCTTGGAAAAACTGTTTTAAAGGGTGTTGCAATTCCACGTGCAAGTTATATGCCACTGGGTATACCTGGAGC
TTTGGATGAGAAAGAGGGATTGCCGTTTAAATTGGATTTAGAAAAGGCAAAGCAATTAATAAGTGAAGCAGGTTACCCTA
ATGGTTTTAAGGCTAATCTTTTAGTTGGTAGTCTTACATATATGTCATCTGTTGCGCAGTCTATCCAAGAAAATGCACGC
AAAGTTGGTATTGAGTTTACAATTGAAAAAATGGCACAAACCCAATTGTTAAGCCGCGTGCGTGGTGGAAATTATGATAC
GGCTATTATGGGTTGGGGGAGTGCTGATCCTGATGGACATCCTGCTTCATTAAATCATGTTTTTAATCCTGATCCAACAT
TTACAAAAAAGCACAATATGTATTTGGCTTGGCGTGCTGGTTATTATGATGAAAATGTCAACAAAATGGTGATGGATACG
TTGTTTGAGCAAGATCAAAATAAGCGTATTACACAATATCGTGCTTTACAGCGTTATATGCTTGAGCACGGTCCTATGGT
TTATTTATTTCAGACATATTATACAGTTGGTATGGGCCCAGCAGTAAAAAAATGGGTTTGGAATAGTTTTAGGCTTTACT
ACAATGATGCAGAAAAATATGCGCAGTCATATAAGTAA

Upstream 100 bases:

>100_bases
TATGCTGTTGAAAGATGAAATCGATACATCGGAAATATTTTAGGTGTGCAAAAGGTAAAATAAAATGCAAAATACAAAAA
ATGAAAAATAAGGAAGGAAA

Downstream 100 bases:

>100_bases
AGAGTGTGTGGAGTGCTTGATTATAAATTTTTGACTGTGTGGCAAGAGGGGTGCCACACTAATATTTTATTAAGTGTATG
GGGATTTTATCAAGATGATT

Product: ABC transporter, periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MRKKGMLKNFCILLGAIGCLNIFIPIALGASSKDRLVMAWNIDSISSFDPAQSVEVVTSELLTNICSALVQYDRNDPTKV
RPAMAQSWNVFDGGTRIVFHLRHDLKFNDGRKATAQDLAWSMQRIVKLGLGYAQSLINYGFTKDNVETNIQALDDKTLQL
KLDKPYPIQLVLTVIGQSYASALLDRQTLEAKSVDGDMGNEYLATHSACVGPYKLERWIPGEKVVLQASQYYWGDDVPKT
KQIVVQHVAESASQRLLLEKGDVDIARDLSSEDILDIEKKGGPVKISRVLRPQSIYLSLNNKNAIFANEKVRLALRYLVD
YESLGKTVLKGVAIPRASYMPLGIPGALDEKEGLPFKLDLEKAKQLISEAGYPNGFKANLLVGSLTYMSSVAQSIQENAR
KVGIEFTIEKMAQTQLLSRVRGGNYDTAIMGWGSADPDGHPASLNHVFNPDPTFTKKHNMYLAWRAGYYDENVNKMVMDT
LFEQDQNKRITQYRALQRYMLEHGPMVYLFQTYYTVGMGPAVKKWVWNSFRLYYNDAEKYAQSYK

Sequences:

>Translated_545_residues
MRKKGMLKNFCILLGAIGCLNIFIPIALGASSKDRLVMAWNIDSISSFDPAQSVEVVTSELLTNICSALVQYDRNDPTKV
RPAMAQSWNVFDGGTRIVFHLRHDLKFNDGRKATAQDLAWSMQRIVKLGLGYAQSLINYGFTKDNVETNIQALDDKTLQL
KLDKPYPIQLVLTVIGQSYASALLDRQTLEAKSVDGDMGNEYLATHSACVGPYKLERWIPGEKVVLQASQYYWGDDVPKT
KQIVVQHVAESASQRLLLEKGDVDIARDLSSEDILDIEKKGGPVKISRVLRPQSIYLSLNNKNAIFANEKVRLALRYLVD
YESLGKTVLKGVAIPRASYMPLGIPGALDEKEGLPFKLDLEKAKQLISEAGYPNGFKANLLVGSLTYMSSVAQSIQENAR
KVGIEFTIEKMAQTQLLSRVRGGNYDTAIMGWGSADPDGHPASLNHVFNPDPTFTKKHNMYLAWRAGYYDENVNKMVMDT
LFEQDQNKRITQYRALQRYMLEHGPMVYLFQTYYTVGMGPAVKKWVWNSFRLYYNDAEKYAQSYK
>Mature_545_residues
MRKKGMLKNFCILLGAIGCLNIFIPIALGASSKDRLVMAWNIDSISSFDPAQSVEVVTSELLTNICSALVQYDRNDPTKV
RPAMAQSWNVFDGGTRIVFHLRHDLKFNDGRKATAQDLAWSMQRIVKLGLGYAQSLINYGFTKDNVETNIQALDDKTLQL
KLDKPYPIQLVLTVIGQSYASALLDRQTLEAKSVDGDMGNEYLATHSACVGPYKLERWIPGEKVVLQASQYYWGDDVPKT
KQIVVQHVAESASQRLLLEKGDVDIARDLSSEDILDIEKKGGPVKISRVLRPQSIYLSLNNKNAIFANEKVRLALRYLVD
YESLGKTVLKGVAIPRASYMPLGIPGALDEKEGLPFKLDLEKAKQLISEAGYPNGFKANLLVGSLTYMSSVAQSIQENAR
KVGIEFTIEKMAQTQLLSRVRGGNYDTAIMGWGSADPDGHPASLNHVFNPDPTFTKKHNMYLAWRAGYYDENVNKMVMDT
LFEQDQNKRITQYRALQRYMLEHGPMVYLFQTYYTVGMGPAVKKWVWNSFRLYYNDAEKYAQSYK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=524, Percent_Identity=28.8167938931298, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI1787052, Length=507, Percent_Identity=25.0493096646943, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1789966, Length=536, Percent_Identity=22.5746268656716, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1789397, Length=482, Percent_Identity=23.6514522821577, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1787495, Length=536, Percent_Identity=23.6940298507463, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081878, Length=550, Percent_Identity=23.6363636363636, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787551, Length=317, Percent_Identity=26.1829652996845, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61341; Mature: 61341

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKGMLKNFCILLGAIGCLNIFIPIALGASSKDRLVMAWNIDSISSFDPAQSVEVVTSE
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
LLTNICSALVQYDRNDPTKVRPAMAQSWNVFDGGTRIVFHLRHDLKFNDGRKATAQDLAW
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCEECCCCCHHHHHHHH
SMQRIVKLGLGYAQSLINYGFTKDNVETNIQALDDKTLQLKLDKPYPIQLVLTVIGQSYA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHH
SALLDRQTLEAKSVDGDMGNEYLATHSACVGPYKLERWIPGEKVVLQASQYYWGDDVPKT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCHH
KQIVVQHVAESASQRLLLEKGDVDIARDLSSEDILDIEKKGGPVKISRVLRPQSIYLSLN
HHHHHHHHHHHHHHEEEHCCCCCHHHHCCCCCCCEEHHCCCCCEEEEEECCCEEEEEEEC
NKNAIFANEKVRLALRYLVDYESLGKTVLKGVAIPRASYMPLGIPGALDEKEGLPFKLDL
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEH
EKAKQLISEAGYPNGFKANLLVGSLTYMSSVAQSIQENARKVGIEFTIEKMAQTQLLSRV
HHHHHHHHHCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RGGNYDTAIMGWGSADPDGHPASLNHVFNPDPTFTKKHNMYLAWRAGYYDENVNKMVMDT
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
LFEQDQNKRITQYRALQRYMLEHGPMVYLFQTYYTVGMGPAVKKWVWNSFRLYYNDAEKY
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHHHCCCEEEECHHHHH
AQSYK
HHCCC
>Mature Secondary Structure
MRKKGMLKNFCILLGAIGCLNIFIPIALGASSKDRLVMAWNIDSISSFDPAQSVEVVTSE
CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
LLTNICSALVQYDRNDPTKVRPAMAQSWNVFDGGTRIVFHLRHDLKFNDGRKATAQDLAW
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCEECCCCCHHHHHHHH
SMQRIVKLGLGYAQSLINYGFTKDNVETNIQALDDKTLQLKLDKPYPIQLVLTVIGQSYA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHH
SALLDRQTLEAKSVDGDMGNEYLATHSACVGPYKLERWIPGEKVVLQASQYYWGDDVPKT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCHH
KQIVVQHVAESASQRLLLEKGDVDIARDLSSEDILDIEKKGGPVKISRVLRPQSIYLSLN
HHHHHHHHHHHHHHEEEHCCCCCHHHHCCCCCCCEEHHCCCCCEEEEEECCCEEEEEEEC
NKNAIFANEKVRLALRYLVDYESLGKTVLKGVAIPRASYMPLGIPGALDEKEGLPFKLDL
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEH
EKAKQLISEAGYPNGFKANLLVGSLTYMSSVAQSIQENARKVGIEFTIEKMAQTQLLSRV
HHHHHHHHHCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RGGNYDTAIMGWGSADPDGHPASLNHVFNPDPTFTKKHNMYLAWRAGYYDENVNKMVMDT
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
LFEQDQNKRITQYRALQRYMLEHGPMVYLFQTYYTVGMGPAVKKWVWNSFRLYYNDAEKY
HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHHHCCCEEEECHHHHH
AQSYK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]