Click here to switch to the map view.

The map label for this gene is ybiS [H]

Identifier: 49475910

GI number: 49475910

Start: 1319206

End: 1319955

Strand: Reverse

Name: ybiS [H]

Synonym: BH11870

Alternate gene names: 49475910

Gene position: 1319955-1319206 (Counterclockwise)

Preceding gene: 49475912

Following gene: 49475907

Centisome position: 68.35

GC content: 42.27

Gene sequence:

>750_bases
GTGTTATCTCGTCGTGCCTTTTTAATTGCAGCACCTCTAGCTTTGGTTGGGTGTGCTACGCGTCATTCAGATATGTCGTT
TGTTTCTTCTCAACAGGTTCTATACATTCCGGAAGAAATACGAGCCTTATACGGACCTGTAACGAATGAGCCTTATTTCT
TACCTGCTGTTGATCTTTCGACAATTGATCCAAAATTTTGGCGTCAGCAGGTGATTTATTATACATCTTATCCACCTGGA
ACATTGGTTATAGATACACAGGAATGTTTTCTTTACCTTATTGGTGAAAATGGGAGAGCTTTGCGTTATGGTATTGGGGT
TGGTAAGGAAGGGCTAGCATTTGAAGGTGAGGGGGTTGTACAGCGTAAGCGTCGATGGCCAAATTGGGCTCCTACGGCGG
CGATGATGGCCAGGGAACCAGAACGTTATGGTCATTTAGGACGAGGAATGCCACCAGGACCCGATAATCCATTAGGAGCA
AGAGCTCTTTATCTTTTTAAAAATGGACAGGATACACTCTTCCGTATTCATGGCTCACACGAGTCGTGGTCAATTGGCCA
TGCTATTTCAAGTGGATGTATTCGTTTGCTTAATCAAGATATCATTGATCTTTATGATCGTGTCCCTATTGGATCGCGTG
TGGTGGTGTTGCAGAATAGTGAGAGTAGACCTAGTATTTTAAATCAACAATCAAAAACTTACGATCCACTACAGTCAACG
ATTAATCCAAGTGAAAGTGAATTGTTTTAA

Upstream 100 bases:

>100_bases
GATTTTAATCATAAGAGACTTCCCAATTAACGTTAACAGTGTGCTAAGTTTTTCATAGTATGCAGGTTTATATGAAGAAT
TAATCGGAGAAAATAAAAGA

Downstream 100 bases:

>100_bases
TTCTAAGAAGTACTCTCTTGAGGGCGCATCATTGGAGTAATGTTTGGGTTGTTACTCAATGATTTCTTTTGTAAATAGAG
AGTATCGTGTACAAAAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MLSRRAFLIAAPLALVGCATRHSDMSFVSSQQVLYIPEEIRALYGPVTNEPYFLPAVDLSTIDPKFWRQQVIYYTSYPPG
TLVIDTQECFLYLIGENGRALRYGIGVGKEGLAFEGEGVVQRKRRWPNWAPTAAMMAREPERYGHLGRGMPPGPDNPLGA
RALYLFKNGQDTLFRIHGSHESWSIGHAISSGCIRLLNQDIIDLYDRVPIGSRVVVLQNSESRPSILNQQSKTYDPLQST
INPSESELF

Sequences:

>Translated_249_residues
MLSRRAFLIAAPLALVGCATRHSDMSFVSSQQVLYIPEEIRALYGPVTNEPYFLPAVDLSTIDPKFWRQQVIYYTSYPPG
TLVIDTQECFLYLIGENGRALRYGIGVGKEGLAFEGEGVVQRKRRWPNWAPTAAMMAREPERYGHLGRGMPPGPDNPLGA
RALYLFKNGQDTLFRIHGSHESWSIGHAISSGCIRLLNQDIIDLYDRVPIGSRVVVLQNSESRPSILNQQSKTYDPLQST
INPSESELF
>Mature_249_residues
MLSRRAFLIAAPLALVGCATRHSDMSFVSSQQVLYIPEEIRALYGPVTNEPYFLPAVDLSTIDPKFWRQQVIYYTSYPPG
TLVIDTQECFLYLIGENGRALRYGIGVGKEGLAFEGEGVVQRKRRWPNWAPTAAMMAREPERYGHLGRGMPPGPDNPLGA
RALYLFKNGQDTLFRIHGSHESWSIGHAISSGCIRLLNQDIIDLYDRVPIGSRVVVLQNSESRPSILNQQSKTYDPLQST
INPSESELF

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=233, Percent_Identity=33.4763948497854, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788299, Length=139, Percent_Identity=35.2517985611511, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787356, Length=143, Percent_Identity=34.965034965035, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787968, Length=140, Percent_Identity=38.5714285714286, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27902; Mature: 27902

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRRAFLIAAPLALVGCATRHSDMSFVSSQQVLYIPEEIRALYGPVTNEPYFLPAVDLS
CCCCCCHHEEHHHHHHHHHCCCCCHHHHCCCEEEECCHHHHHHHCCCCCCCEEEEECCCC
TIDPKFWRQQVIYYTSYPPGTLVIDTQECFLYLIGENGRALRYGIGVGKEGLAFEGEGVV
CCCHHHHHCEEEEEECCCCCEEEEEHHHEEEEEECCCCCEEEEECCCCCCCCEECCCCHH
QRKRRWPNWAPTAAMMAREPERYGHLGRGMPPGPDNPLGARALYLFKNGQDTLFRIHGSH
HHHHCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
ESWSIGHAISSGCIRLLNQDIIDLYDRVPIGSRVVVLQNSESRPSILNQQSKTYDPLQST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHHH
INPSESELF
CCCCHHCCC
>Mature Secondary Structure
MLSRRAFLIAAPLALVGCATRHSDMSFVSSQQVLYIPEEIRALYGPVTNEPYFLPAVDLS
CCCCCCHHEEHHHHHHHHHCCCCCHHHHCCCEEEECCHHHHHHHCCCCCCCEEEEECCCC
TIDPKFWRQQVIYYTSYPPGTLVIDTQECFLYLIGENGRALRYGIGVGKEGLAFEGEGVV
CCCHHHHHCEEEEEECCCCCEEEEEHHHEEEEEECCCCCEEEEECCCCCCCCEECCCCHH
QRKRRWPNWAPTAAMMAREPERYGHLGRGMPPGPDNPLGARALYLFKNGQDTLFRIHGSH
HHHHCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
ESWSIGHAISSGCIRLLNQDIIDLYDRVPIGSRVVVLQNSESRPSILNQQSKTYDPLQST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHHH
INPSESELF
CCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]