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The map label for this gene is radC [C]

Identifier: 49475599

GI number: 49475599

Start: 939706

End: 940500

Strand: Reverse

Name: radC [C]

Synonym: BH08340

Alternate gene names: 49475599

Gene position: 940500-939706 (Counterclockwise)

Preceding gene: 49475600

Following gene: 49475594

Centisome position: 48.7

GC content: 36.86

Gene sequence:

>795_bases
ATGGCTAAAAAGTTAAGTAAAAAGGGAGATATTCAAAGAGATCATTTTGCATTAATCTCAAGTTTCCCACTTAATCAAAC
ACCAGAAACAAAAAGTGAAAAACTTCAGAAAAATTTACTGCTTCATAAGTATTACCAGGGACATCGTGAACGTCTGCGTA
GACGTTATTTAAAGTCAAAAGGAAATGCAATTGAAGATTATGAATATCTTGAATTATTGCTTTTTCGCACGATACCCAGA
GCAAATACAAAACCAATAGCTAAGAGCTTAATAGCACATTTTGGCTCATTAGCCGATGTGTTGGGTGCTGATATTCATAG
ACTTCAAGAAGTCCAAGGGTGTGGTCCGGCAACTGCACTCGATTTAAAAATTATTTCAGATGTTGCAGGACGTCTTGCCC
GTGCGCAATTATTTAAACGCGATATTTTTTCATCATGGGATCAAGTATTAGCTTATTGTAAAGCTGTCATGGCACACGAA
ACACGAGAACAATTTCGTGTGTTGTTTCTTGATAAGAAAAATGGTTTGCTTGCTGATGAAGTGCAACAAACTGGAACAAT
CGACCATACCCCTGTTTATCCTCGTGAAGTAATTTCTCGAGCTTTGCAATTGTCTGCATCGGGACTTATTTTGGTTCACA
ACCACCCTTCTGGCGATGCAACACCTTCTAAAGCAGATGTAACAATGACTTATAGATTAAAAGATGCGGCAAATGCATTA
GGAATTACTGTTCATGACCACCTTATTATAGCACGAAATAATTACACAAGCTTTAAAGAATTAAAGTTCATATGA

Upstream 100 bases:

>100_bases
CAATTGGTGTAACAAACGAAGGTTGCGAAATATTTACGCAATCTCCTAAAAATATTTTTTATATTTCAAATTCATATGTC
TAAATAAATGTAGAAATGTC

Downstream 100 bases:

>100_bases
ACCTCTTTGGATAAAGAAAAATTCATAAAATTAATGGTAACAAATCAATTTTCTAAATCAATATCTAATATGGCCATCGA
GAAATTATAGGATAATTCAT

Product: DNA repair protein radC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MAKKLSKKGDIQRDHFALISSFPLNQTPETKSEKLQKNLLLHKYYQGHRERLRRRYLKSKGNAIEDYEYLELLLFRTIPR
ANTKPIAKSLIAHFGSLADVLGADIHRLQEVQGCGPATALDLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHE
TREQFRVLFLDKKNGLLADEVQQTGTIDHTPVYPREVISRALQLSASGLILVHNHPSGDATPSKADVTMTYRLKDAANAL
GITVHDHLIIARNNYTSFKELKFI

Sequences:

>Translated_264_residues
MAKKLSKKGDIQRDHFALISSFPLNQTPETKSEKLQKNLLLHKYYQGHRERLRRRYLKSKGNAIEDYEYLELLLFRTIPR
ANTKPIAKSLIAHFGSLADVLGADIHRLQEVQGCGPATALDLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHE
TREQFRVLFLDKKNGLLADEVQQTGTIDHTPVYPREVISRALQLSASGLILVHNHPSGDATPSKADVTMTYRLKDAANAL
GITVHDHLIIARNNYTSFKELKFI
>Mature_263_residues
AKKLSKKGDIQRDHFALISSFPLNQTPETKSEKLQKNLLLHKYYQGHRERLRRRYLKSKGNAIEDYEYLELLLFRTIPRA
NTKPIAKSLIAHFGSLADVLGADIHRLQEVQGCGPATALDLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHET
REQFRVLFLDKKNGLLADEVQQTGTIDHTPVYPREVISRALQLSASGLILVHNHPSGDATPSKADVTMTYRLKDAANALG
ITVHDHLIIARNNYTSFKELKFI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=35.2112676056338, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=48.3050847457627, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788312, Length=118, Percent_Identity=48.3050847457627, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=45.7627118644068, Blast_Score=103, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 29874; Mature: 29743

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKLSKKGDIQRDHFALISSFPLNQTPETKSEKLQKNLLLHKYYQGHRERLRRRYLKSK
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNAIEDYEYLELLLFRTIPRANTKPIAKSLIAHFGSLADVLGADIHRLQEVQGCGPATAL
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHETREQFRVLFLDKKNGLLADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHH
VQQTGTIDHTPVYPREVISRALQLSASGLILVHNHPSGDATPSKADVTMTYRLKDAANAL
HHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC
GITVHDHLIIARNNYTSFKELKFI
EEEEECEEEEEECCCCCHHHHCCC
>Mature Secondary Structure 
AKKLSKKGDIQRDHFALISSFPLNQTPETKSEKLQKNLLLHKYYQGHRERLRRRYLKSK
CCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNAIEDYEYLELLLFRTIPRANTKPIAKSLIAHFGSLADVLGADIHRLQEVQGCGPATAL
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHETREQFRVLFLDKKNGLLADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHH
VQQTGTIDHTPVYPREVISRALQLSASGLILVHNHPSGDATPSKADVTMTYRLKDAANAL
HHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC
GITVHDHLIIARNNYTSFKELKFI
EEEEECEEEEEECCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA