BacMap

Definition	Bartonella henselae str. Houston-1, complete genome.
Accession	NC_005956
Length	1,931,047

Click here to switch to the map view.

The map label for this gene is yciK [H]

Identifier: 49475318

GI number: 49475318

Start: 610229

End: 610978

Strand: Reverse

Name: yciK [H]

Synonym: BH05230

Alternate gene names: 49475318

Gene position: 610978-610229 (Counterclockwise)

Preceding gene: 49475319

Following gene: 49475312

Centisome position: 31.64

GC content: 40.93

Gene sequence:

>750_bases
ATGAAAAAACTTGATTTTAGTCTCTTTGGTCGTGTTGCACTCGTTACCGGTGCTTCAAGAGGAATTGGATATCATTTAGC
ATTAGAGCTTGCAGAACGTGGCGCTCACATTATTGCTCTTGCACGAACAATGAGTGGGCTCACTGAACTTGACAATCAAA
TCCAAAAAAAAGGTGCTCGCGCAACACTCATTCCAATCGACTTACATCATATGGAAAACATTGATGCTCTTGCTACTTCA
ATTACTCAGGATTGGAAAAAACTTGATATTATGATCGCAAATGCAGGAATCCTTGGAACTCTTTCACCAATAGCTCACAT
AGAAAATAAGGTATTTGAAGATATTTTTCAAATAAATCTTATCAGCCAATGGCGCTTAATGAAAGCTGTTGAACCCTTAT
TGCGTAAATCTGATGCTGGACGAGTAATTCTTTTATCTTCAAGCGTTGCTCATGTTGCCCGCGCTTTCTGGGGACCCTAT
GCAGCCTCTAAAGCGGCTCTAGAAATTATTTCCCGTTGTTGGGCAGAAGAATTAAAACAAACCCCAATCAAGATTAATTG
TGTTGATCCCGGTGCAACACGCACTGCCATGCGCGCCCAAGCTATGCCTGGGGAAGATCCTCAAACTCTTCCTCCACCAC
AAGAAGTTGCAGAAAAGATAGCACATTTACTCTCACCTGATTTAAAGGAAACCGGCAAACTCTTTAATGTGCGTAAAAAT
CGATTCATGAATTATCACGCACCTAATTAA

Upstream 100 bases:

>100_bases
CTGACCATTATTTTACTGGAGATTATCCTACACATCTAGTCGATCAAGAAAGTATTCCTAAAATTTATCAATCATCTGTC
CTAAAAACAAGAGATTAAGG

Downstream 100 bases:

>100_bases
AGCAATAAATTAATTTATAAAAATAATTCATTTTTTTCTGATGAATTAGAAAAATCATTTAAGAAAATAGTAAATATATC
TTTCATAAACTATCTAAATT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKKLDFSLFGRVALVTGASRGIGYHLALELAERGAHIIALARTMSGLTELDNQIQKKGARATLIPIDLHHMENIDALATS
ITQDWKKLDIMIANAGILGTLSPIAHIENKVFEDIFQINLISQWRLMKAVEPLLRKSDAGRVILLSSSVAHVARAFWGPY
AASKAALEIISRCWAEELKQTPIKINCVDPGATRTAMRAQAMPGEDPQTLPPPQEVAEKIAHLLSPDLKETGKLFNVRKN
RFMNYHAPN

Sequences:

>Translated_249_residues
MKKLDFSLFGRVALVTGASRGIGYHLALELAERGAHIIALARTMSGLTELDNQIQKKGARATLIPIDLHHMENIDALATS
ITQDWKKLDIMIANAGILGTLSPIAHIENKVFEDIFQINLISQWRLMKAVEPLLRKSDAGRVILLSSSVAHVARAFWGPY
AASKAALEIISRCWAEELKQTPIKINCVDPGATRTAMRAQAMPGEDPQTLPPPQEVAEKIAHLLSPDLKETGKLFNVRKN
RFMNYHAPN
>Mature_249_residues
MKKLDFSLFGRVALVTGASRGIGYHLALELAERGAHIIALARTMSGLTELDNQIQKKGARATLIPIDLHHMENIDALATS
ITQDWKKLDIMIANAGILGTLSPIAHIENKVFEDIFQINLISQWRLMKAVEPLLRKSDAGRVILLSSSVAHVARAFWGPY
AASKAALEIISRCWAEELKQTPIKINCVDPGATRTAMRAQAMPGEDPQTLPPPQEVAEKIAHLLSPDLKETGKLFNVRKN
RFMNYHAPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=230, Percent_Identity=27.3913043478261, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=29.1139240506329, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI5031737, Length=231, Percent_Identity=26.4069264069264, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI7657478, Length=212, Percent_Identity=28.3018867924528, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI142976729, Length=219, Percent_Identity=25.1141552511416, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=27.0992366412214, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=28.7234042553192, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=27.4261603375527, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI19743808, Length=238, Percent_Identity=25.6302521008403, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI225579078, Length=204, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI223718074, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI210032110, Length=235, Percent_Identity=25.1063829787234, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40548397, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI214010158, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI214010156, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI22758144, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=26.9430051813472, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI150247226, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI186928839, Length=213, Percent_Identity=27.2300469483568, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7706318, Length=225, Percent_Identity=23.1111111111111, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI59889578, Length=158, Percent_Identity=25.9493670886076, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787526, Length=238, Percent_Identity=39.0756302521008, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=31.2757201646091, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790717, Length=192, Percent_Identity=30.7291666666667, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082100, Length=238, Percent_Identity=29.8319327731092, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI2367175, Length=231, Percent_Identity=29.4372294372294, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=240, Percent_Identity=25, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=27.7486910994764, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082160, Length=208, Percent_Identity=24.5192307692308, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789378, Length=194, Percent_Identity=32.4742268041237, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=23.8888888888889, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=209, Percent_Identity=33.9712918660287, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=32.1951219512195, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=233, Percent_Identity=25.7510729613734, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=228, Percent_Identity=32.0175438596491, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=247, Percent_Identity=31.9838056680162, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=242, Percent_Identity=27.6859504132231, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=243, Percent_Identity=27.9835390946502, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=26.1224489795918, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=198, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=28.2945736434109, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=31.8627450980392, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=31.219512195122, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=238, Percent_Identity=27.7310924369748, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=208, Percent_Identity=28.3653846153846, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=222, Percent_Identity=26.5765765765766, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=195, Percent_Identity=24.1025641025641, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=254, Percent_Identity=25.5905511811024, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=238, Percent_Identity=27.7310924369748, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=158, Percent_Identity=27.8481012658228, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=205, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17532791, Length=146, Percent_Identity=31.5068493150685, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=27.4900398406374, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=26.5625, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=235, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=235, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=30.6532663316583, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=211, Percent_Identity=30.8056872037915, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=207, Percent_Identity=28.5024154589372, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=27.0935960591133, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=249, Percent_Identity=24.8995983935743, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=208, Percent_Identity=25.9615384615385, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21355319, Length=230, Percent_Identity=26.5217391304348, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644339, Length=225, Percent_Identity=29.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=30.3664921465969, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=230, Percent_Identity=27.3913043478261, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=29.9595141700405, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24639444, Length=230, Percent_Identity=26.9565217391304, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007236, Length=227, Percent_Identity=26.8722466960352, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571526, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364892, Length=232, Percent_Identity=26.7241379310345, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI45554248, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640117, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573296, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=23.9583333333333, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=25.6830601092896, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19921754, Length=206, Percent_Identity=25.7281553398058, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647931, Length=220, Percent_Identity=24.0909090909091, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27500; Mature: 27500

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLDFSLFGRVALVTGASRGIGYHLALELAERGAHIIALARTMSGLTELDNQIQKKGAR
CCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCC
ATLIPIDLHHMENIDALATSITQDWKKLDIMIANAGILGTLSPIAHIENKVFEDIFQINL
EEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ISQWRLMKAVEPLLRKSDAGRVILLSSSVAHVARAFWGPYAASKAALEIISRCWAEELKQ
HHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
TPIKINCVDPGATRTAMRAQAMPGEDPQTLPPPQEVAEKIAHLLSPDLKETGKLFNVRKN
CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RFMNYHAPN
HCCCCCCCC
>Mature Secondary Structure
MKKLDFSLFGRVALVTGASRGIGYHLALELAERGAHIIALARTMSGLTELDNQIQKKGAR
CCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCC
ATLIPIDLHHMENIDALATSITQDWKKLDIMIANAGILGTLSPIAHIENKVFEDIFQINL
EEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ISQWRLMKAVEPLLRKSDAGRVILLSSSVAHVARAFWGPYAASKAALEIISRCWAEELKQ
HHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
TPIKINCVDPGATRTAMRAQAMPGEDPQTLPPPQEVAEKIAHLLSPDLKETGKLFNVRKN
CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RFMNYHAPN
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]