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The map label for this gene is ybjT [H]

Identifier: 49474860

GI number: 49474860

Start: 43332

End: 44336

Strand: Reverse

Name: ybjT [H]

Synonym: BH00320

Alternate gene names: 49474860

Gene position: 44336-43332 (Counterclockwise)

Preceding gene: 49474861

Following gene: 49474859

Centisome position: 2.3

GC content: 40.3

Gene sequence:

>1005_bases
TTGATCATGCAACTTGATTGTGCACTTTATCAACATCCTAAACTTATTACCGTTTTCGGCGGCTCTGGTTTTGTAGGACG
ACATGTCGTTGAAGCTTTAACTAAGCGGGGTTATCGGGTTCGTATTGCCGTTCGTTCTCCGCAAAAAGCTTATTACATGC
TCCAAATAGGAGAAGTAGGACAAACCCAAATGCTTAGAACTGATATCAAGTGTCGCGCTTCTGTTGCACGCGCATTGCTT
GGTTCAGATGGTGCAGTATTTCTTCCTGGTAGTTTAGCACAAGCAAATCAACCGAACTTTCAAAAGACACAAATTGAGGG
TGCACAAAACGTTTCCGAATTAACAGCAGAAGCTGGTATTCCTCTCATTTATATGTCAGCGCTTGTCGCCAATAAAAATG
CTTCTTTTTTGTATGCACGCGTTAAATCCATGAGTGAAGAAATCATTCATAACGAGCATCCTCAAGCAATTATTATGCGC
CCATCCATCATCTTTGGACCAGAAGATTGTTTCTTTAATAACTTGGCAAATTTGTCGTGTTTTCTACCGATCATACCCCT
TTTTGGCGGTGGGCAAAGTAAATTGCAGCCTGTATATGTTGGTGATGTCGCTGAATTTATTGTACGCGCTCTAGAAGGAC
AAGTTATCTCTGGAAAAAGTTATGATCTTGGGGGTCCACAGATTATCACATTTCAAAATGTCCTTGAATATATATTAAAA
ATTATTCATCGTAAAAAAACAATTCTCTCTATGCCTCTTTCTGCCGGCTTATTTATTGGAGGTCTTTTGGGAACTATTGG
TAAATTGCCTCTCGCGCCAACACTAGTAACAGCTAGTCAAATACGTTTTCTGCAAATAGATAACATTGTTTCTCAAGAAG
CTATAGAAAATGGCTACACTTTAGAAGGAGTAGGAATTACCCCTAAAGCAATGGCGGCACTCTTGCCAAGCTATCTCTGG
CGATTTCGTCCACATGGTCAATTTTCCCGAAATTTACCAGCTTAG

Upstream 100 bases:

>100_bases
ATAGGCGGGTCCCTTTATCTTGCCGGTGATATTTTACGTGACAACAAAACACCACCATGTTAGAAATTGATTATTCATAG
AGCTTTGAAAGATAGACCTT

Downstream 100 bases:

>100_bases
CCCATATTTTCCCAGCAGCTTGTGTCTGTGCAACGCATTTTCCCAATCAGAGAACACTTAAACTAGAGACCAGAAAGTTT
CTATAAAAGAAGCTTTTTAT

Product: NADH-ubiquinone oxidoreductase

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MIMQLDCALYQHPKLITVFGGSGFVGRHVVEALTKRGYRVRIAVRSPQKAYYMLQIGEVGQTQMLRTDIKCRASVARALL
GSDGAVFLPGSLAQANQPNFQKTQIEGAQNVSELTAEAGIPLIYMSALVANKNASFLYARVKSMSEEIIHNEHPQAIIMR
PSIIFGPEDCFFNNLANLSCFLPIIPLFGGGQSKLQPVYVGDVAEFIVRALEGQVISGKSYDLGGPQIITFQNVLEYILK
IIHRKKTILSMPLSAGLFIGGLLGTIGKLPLAPTLVTASQIRFLQIDNIVSQEAIENGYTLEGVGITPKAMAALLPSYLW
RFRPHGQFSRNLPA

Sequences:

>Translated_334_residues
MIMQLDCALYQHPKLITVFGGSGFVGRHVVEALTKRGYRVRIAVRSPQKAYYMLQIGEVGQTQMLRTDIKCRASVARALL
GSDGAVFLPGSLAQANQPNFQKTQIEGAQNVSELTAEAGIPLIYMSALVANKNASFLYARVKSMSEEIIHNEHPQAIIMR
PSIIFGPEDCFFNNLANLSCFLPIIPLFGGGQSKLQPVYVGDVAEFIVRALEGQVISGKSYDLGGPQIITFQNVLEYILK
IIHRKKTILSMPLSAGLFIGGLLGTIGKLPLAPTLVTASQIRFLQIDNIVSQEAIENGYTLEGVGITPKAMAALLPSYLW
RFRPHGQFSRNLPA
>Mature_334_residues
MIMQLDCALYQHPKLITVFGGSGFVGRHVVEALTKRGYRVRIAVRSPQKAYYMLQIGEVGQTQMLRTDIKCRASVARALL
GSDGAVFLPGSLAQANQPNFQKTQIEGAQNVSELTAEAGIPLIYMSALVANKNASFLYARVKSMSEEIIHNEHPQAIIMR
PSIIFGPEDCFFNNLANLSCFLPIIPLFGGGQSKLQPVYVGDVAEFIVRALEGQVISGKSYDLGGPQIITFQNVLEYILK
IIHRKKTILSMPLSAGLFIGGLLGTIGKLPLAPTLVTASQIRFLQIDNIVSQEAIENGYTLEGVGITPKAMAALLPSYLW
RFRPHGQFSRNLPA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=253, Percent_Identity=34.3873517786561, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI87081793, Length=267, Percent_Identity=21.7228464419476, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17556106, Length=245, Percent_Identity=27.7551020408163, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24667554, Length=325, Percent_Identity=26.7692307692308, Blast_Score=98, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 36518; Mature: 36518

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMQLDCALYQHPKLITVFGGSGFVGRHVVEALTKRGYRVRIAVRSPQKAYYMLQIGEVG
CEEEECCHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
QTQMLRTDIKCRASVARALLGSDGAVFLPGSLAQANQPNFQKTQIEGAQNVSELTAEAGI
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCC
PLIYMSALVANKNASFLYARVKSMSEEIIHNEHPQAIIMRPSIIFGPEDCFFNNLANLSC
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCHHHHHHHHCCCEE
FLPIIPLFGGGQSKLQPVYVGDVAEFIVRALEGQVISGKSYDLGGPQIITFQNVLEYILK
HHHHHHCCCCCCCCCCCEEECHHHHHHHHHHCCCEECCCCCCCCCCEEEEHHHHHHHHHH
IIHRKKTILSMPLSAGLFIGGLLGTIGKLPLAPTLVTASQIRFLQIDNIVSQEAIENGYT
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEHHHHHHHHHHHCCCE
LEGVGITPKAMAALLPSYLWRFRPHGQFSRNLPA
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIMQLDCALYQHPKLITVFGGSGFVGRHVVEALTKRGYRVRIAVRSPQKAYYMLQIGEVG
CEEEECCHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
QTQMLRTDIKCRASVARALLGSDGAVFLPGSLAQANQPNFQKTQIEGAQNVSELTAEAGI
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCC
PLIYMSALVANKNASFLYARVKSMSEEIIHNEHPQAIIMRPSIIFGPEDCFFNNLANLSC
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCHHHHHHHHCCCEE
FLPIIPLFGGGQSKLQPVYVGDVAEFIVRALEGQVISGKSYDLGGPQIITFQNVLEYILK
HHHHHHCCCCCCCCCCCEEECHHHHHHHHHHCCCEECCCCCCCCCCEEEEHHHHHHHHHH
IIHRKKTILSMPLSAGLFIGGLLGTIGKLPLAPTLVTASQIRFLQIDNIVSQEAIENGYT
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEHHHHHHHHHHHCCCE
LEGVGITPKAMAALLPSYLWRFRPHGQFSRNLPA
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]