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The map label for this gene is ydiU [C]

Identifier: 49186312

GI number: 49186312

Start: 3272898

End: 3274364

Strand: Direct

Name: ydiU [C]

Synonym: BAS3307

Alternate gene names: 49186312

Gene position: 3272898-3274364 (Clockwise)

Preceding gene: 49186311

Following gene: 49186313

Centisome position: 62.6

GC content: 40.01

Gene sequence:

>1467_bases
ATGACTAAAAATAATGAAGCTGGTTGGAATTTAGACCATAGTTATACGACTTTACCACAATCATTTTATACAGAAATCCC
CCCTACTCCCGTAAGTTCACCGGAGTTAGTTAAGCTAAACCATTCACTTGCGATATCTCTTGGCTTTAATCCTGAAGAAT
TGAAGAAAGAAGCCGAAATCGCTATTTTCGCCGGTAATGCACTCCCAGAAGGAGCTCATCCATTAGCGCAAGCGTATGCT
GGACATCAATTCGGACATTTTAATATGTTAGGCGACGGTCGTGCTCTTTTAATTGGTGAACAAATGACTCCTTCAGGTAA
ACGTTTTGACATTCAACTGAAAGGTTCTGGCCCTACTCCGTATTCACGCCGCGGTGATGGTCGTGCTGCACTCGGTCCAA
TGCTACGTGAATATATTATAAGCGAAGCAATGTATGCACTTGATATTCCAACTACCCGCAGTTTAGCAGTTGTCACAACT
GGAGAACCTACATACCGTGAAACAAAGTTACCTGGAGCAATTTTAACTAGAGTAGCTAGTAGCCATATTCGCGTTGGTAC
ATTTCAATATGCTGCGGCTCGCGGTTCAATCGAGGATCTTCAATCACTAGCTGACTATACAATAAAAAGACATTATCCAG
AAATTGAAGCTCATGAAAACCGATATACTGCATTGCTACAAGAAGTCATAAAGAAACAAGCAAGCCTCATCGCTAAATGG
CAACTTGTTGGATTTATCCACGGTGTAATGAACACTGACAATATAACAATTAGCGGAGAAACAATTGATTACGGTCCTTG
TGCATTTATGGACAATTACGACCAAGGAACCGTATTTAGCTCCATTGATACACAAGGCCGCTACGCATATGGAAATCAGC
CGTATATGGCCGCATGGGATCTCGCGCGACTAGCTGAATCTTTAATACCAATCCTGCACGAAGATGAAGAAGAAGTATTA
AAGATTGCTCAAGACGAAATTTCAAAATTTAGCGTACAGTATGAAAAACAGTGGTTCCTTGGAATGAAAAAGAAATTAGG
ACTATTTAGCAACGAAGAACAAGATCAATCACTTATTGAGCAACTTTTAAAAATGATGGAGAAATTTAAAGCGGATTACA
CAAATACATTCCGTTCATTAACTCTTAATACGATCGAAAATACAGCTCTATTTGAAAGTCCTGAATTTAAAGAATGGTAC
AAACTGTGGCAATCTCGATTAGAACGACAAGAAGAATCGAAAGAAAATGCCTACGAAATGATGAAAAATAATAACCCATC
CATCATCCCAAGAAACCATCGCGTAGAAGAAGCACTAGAAGCAGCTGTCACAAATGGCGACTATAGCGTAATGGAAAAAC
TTCTTGAAGCTCTATCCAATCCTTATGCGTATGCTACAGAGCAAGAAGAATACTGCGTTCCACCTGTGCCTACGAATCGT
CCTTATCGTACTTTTTGTGGGACTTGA

Upstream 100 bases:

>100_bases
TAGATTGCAAGGGGAAATATCATATTATACTTTTAGCTAATTTTACAAAGAATACATACGTACACATACATAATAAAAAA
ATAAACAAGGAGGAGATAAA

Downstream 100 bases:

>100_bases
TGGTTTAATATGTAAAAAAGGTGTGTTCATACAAATTGTGTGAACACACCCTTTTTATATTCCCACCTCTCAACTAGAAC
TTTAAAATGCCCCTCCCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEVL
KIAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWY
KLWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPVPTNR
PYRTFCGT

Sequences:

>Translated_488_residues
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEVL
KIAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWY
KLWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPVPTNR
PYRTFCGT
>Mature_487_residues
TKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYAG
HQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTG
EPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKWQ
LVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEVLK
IAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYK
LWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPVPTNRP
YRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=442, Percent_Identity=38.9140271493213, Blast_Score=281, Evalue=9e-76,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=39.1213389121339, Blast_Score=352, Evalue=2e-98,
Organism=Saccharomyces cerevisiae, GI6325034, Length=328, Percent_Identity=31.4024390243902, Blast_Score=164, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1065_BACAC (C3LAB5)

Other databases:

- EMBL:   CP001215
- RefSeq:   YP_002813670.1
- EnsemblBacteria:   EBBACT00000122586
- GeneID:   7787370
- GenomeReviews:   CP001215_GR
- KEGG:   bah:BAMEG_1065
- GeneTree:   EBGT00050000004640
- ProtClustDB:   PRK00029
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55170; Mature: 55039

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEI
CCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEVLKIAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYKLWQSRLERQEESKENAYEM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPVPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC
PYRTFCGT
CCCCCCCC
>Mature Secondary Structure 
TKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEI
CCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEVLKIAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYKLWQSRLERQEESKENAYEM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPVPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC
PYRTFCGT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA