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The map label for this gene is yocD [H]

Identifier: 49186045

GI number: 49186045

Start: 3012911

End: 3013942

Strand: Direct

Name: yocD [H]

Synonym: BAS3040

Alternate gene names: 49186045

Gene position: 3012911-3013942 (Clockwise)

Preceding gene: 49186043

Following gene: 49186054

Centisome position: 57.62

GC content: 37.6

Gene sequence:

>1032_bases
ATGTTAATAAAACCAAACAGATTACAGCCAGGAGATATCGTGGCAACAGTAAGTCCTTCATGGGGAGGCGCAGGTGATCC
TGAAATAAGATGGCGTTATGAACAAGGAGTAAAGAGATTAGAAGAGGTTTTCGGTCTTATGGTTATCCCAATGCCCAATA
GTTTAAAAGGTAGCGAATTCATTTATAACAACCCACAGGCTCGTGCGGAAGATTTAATGACAGCATTTAAAGATGCGCGC
GTGAAAGCAATTATTGCAAATATTGGCGGTGAAGATAGCATTCGTTTACTTCCTCATATAGATTTTAATGTGATACGTGA
AAGCCCGAAAATTTTTATGGGATACTCTGACGTTACCGTCTCACATTTATTTTGCCATAAAGCAGGTCTTTCCTCTTTTT
ACGGTCCAGCAAATTTGACCGACTTTGCCGAGAATATAGAGATGGATCCATATACGGTTGAAATGGTAAATCGAACTCTC
TTTTCAAATGAAATGATTGGCGAGATTCAACCAGCTCATAAATGGACGAGTGAGCGTTTAGAATGGATCGAAATAAATAA
GGATACAAGACGTAAGATGCAGCAAAACAACGGATATGAGTTACTTCAAGGCTCTACTACTGTACAAGGGCGCTTAATTG
GTGGTTGCATTGAAGTACTTGAATTTGCAAAAGGAACGGAACTTTGGCCTGAGAAAAAACATTGGGAGGATAGTATTATC
TTCTTTGAAACTTCTGAAGATCACCCAGAACCAAGTTATATAAAGTATTGGTTACGAAATTATGCAGCGCAAGGCATTCT
GAAAAAAGCAAAAGGAATCATTTTTGGTAAACCGAAAGATGAACAATACTATGAAGAATATAAACATGAAATACTGCAGG
TTATGAAGGAACATCATTTAGAAAATTTGCCGATTCTTTATAATTTAAATTTCGGCCATACTGAACCGAAGTTTATTTTA
CCTTACGGTGCGATGGCAGAAATTGATTGTGAAAATGGATCTTTCTCTATTTTAGAGAGTGGCGTGGAATAA

Upstream 100 bases:

>100_bases
AAACGGATTGATGATGAAGAAACTAATGACATGCATCATATTTTTCAATGCTACGGTTTGTATAATCGTATTTCATTACA
TTATGTAGGGCGGAATTCAT

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGGGGGTTCCATTCACATCGCTACCAAGTTAACATTTTGAAGTTCTCCCAGAACGAAAATTTA
TTCTTTTCATAGGTATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLIKPNRLQPGDIVATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE

Sequences:

>Translated_343_residues
MLIKPNRLQPGDIVATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE
>Mature_343_residues
MLIKPNRLQPGDIVATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 39328; Mature: 39328

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKPNRLQPGDIVATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEF
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCE
IYNNPQARAEDLMTAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTV
EECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCHHHCCCCCCEEEECCHHHH
SHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERL
HHHHHHHHCHHHCCCCCCHHHHHHCCCCCCEEHHHHHHHHHCCHHHHCCCCHHHHHHHCC
EWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
EEEECCHHHHHHHHHCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
ENLPILYNLNFGHTEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCHHHHCCCC
>Mature Secondary Structure
MLIKPNRLQPGDIVATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEF
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCE
IYNNPQARAEDLMTAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTV
EECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCHHHCCCCCCEEEECCHHHH
SHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERL
HHHHHHHHCHHHCCCCCCHHHHHHCCCCCCEEHHHHHHHHHCCHHHHCCCCHHHHHHHCC
EWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
EEEECCHHHHHHHHHCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
ENLPILYNLNFGHTEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]