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The map label for this gene is yjbM [H]

Identifier: 49184139

GI number: 49184139

Start: 1173550

End: 1174188

Strand: Direct

Name: yjbM [H]

Synonym: BAS1119

Alternate gene names: 49184139

Gene position: 1173550-1174188 (Clockwise)

Preceding gene: 49184138

Following gene: 49184140

Centisome position: 22.44

GC content: 36.46

Gene sequence:

>639_bases
ATGAATCGAAATTGGGAAGAATTTTTAGCACCTTACCATCAAGCGGTGGCAGAGCTGAAAGTGAAACTAAAAGGAATGCG
TACTCAATTTGCAATGTTAACAGAGCATTCTCCAATTGAGTTTGTAACAGGGAGGGTAAAGTCGGTTGCAAGCATTATTG
ATAAAGCGGAGAAGAGAAATGTACCGTTAGACCGACTGAGAGAAGATATGCAAGACATCGCAGGTCTTCGAATGATGTGT
CAATTTGTTGATGAGATTAAGCCTGTTGTAGAATATCTTAGAAAACGAAATGACTTTGAAATCGTGGAAGAGCGTGATTA
TGTCACGCAAAAGAAAGATAGTGGTTATCGTTCTTATCACGTTGTTATTAGTTATCCTGTTCAAACAATTCAAGGAGAAC
AAAAAGTGTTGGTAGAAATCCAAATACGTACGTTAGCAATGAACTTTTGGGCAACAATTGAGCATTCTTTAAATTATAAA
TATAGTGGACGTTTTCCTGAAGATATTAAAATACGCTTGCAACGTGCAGCAGAAGCAGCATTTTTATTGGATGAAGAAAT
GTCTTCTATTCGTCTTGAAATTCAAGAAGCACAGAAAGCTTTTTCAAGAAAGCAAGAAACGAAAGATTCTGAATCATAA

Upstream 100 bases:

>100_bases
TGAAAATATTGAAGGTAATGCAAATTACGGAGAAGAACTAGTAACTGCTGTAGAAAAAGTATTTCTATAAGCAAATGGAT
TGATTTTGGTGGTGGTTGAA

Downstream 100 bases:

>100_bases
ACTAAAGGGTGTTGGGCGATGAAATTTACAATTATGTCAAAGGGAGATCAATCATCAGATACACTGGCAAGCACGATGAA
AGAATACTTGCTAGATTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES

Sequences:

>Translated_212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
>Mature_212_residues
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMC
QFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYK
YSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 24927; Mature: 24927

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
VPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEE
VVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRLQRAAEAA
EEEECCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHH
FLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
VPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEE
VVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRLQRAAEAA
EEEECCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHH
FLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]