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The map label for this gene is cspA

Identifier: 49184074

GI number: 49184074

Start: 1108773

End: 1108976

Strand: Direct

Name: cspA

Synonym: BAS1054

Alternate gene names: 49184074

Gene position: 1108773-1108976 (Clockwise)

Preceding gene: 49184072

Following gene: 49184075

Centisome position: 21.21

GC content: 39.22

Gene sequence:

>204_bases
ATGGCAGTAACAGGACAAGTAAAATGGTTTAACAACGAAAAAGGCTTCGGTTTCATCGAAGTTCCAGGCGAAAACGACGT
ATTCGTACATTTCTCTGCAATCGAAACTGACGGTTTCAAATCTCTAGAAGAAGGTCAAAAAGTTAGCTTCGAAATCGAAG
AAGGTAACCGTGGACCTCAAGCTAAAAACGTAATCAAACTATAA

Upstream 100 bases:

>100_bases
AGAACTAGTTTATGTTTCGTATTTGATAATGTGTGGATTCTTTTTTTAGATAGGAAAACTAAAAAATTAAAAAAATGTAT
TTTCTTAGGAGGAAATAATT

Downstream 100 bases:

>100_bases
TTTTATAGTTTATTATAGAAAAAAGGATGGCTGCTGCCATCCTTTTTTTGTTGTCATATACGAGCATAATGATTATATTG
GGGGGAAAGCGGGGGATATA

Product: cold shock protein CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVIKL

Sequences:

>Translated_67_residues
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVIKL
>Mature_66_residues
AVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQAKNVIKL

Specific function: Can bind to ATTGG and CCAAT motifs (Y-box motifs) of single stranded oligonucleotides

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=66.6666666666667, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=64.0625, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=63.6363636363636, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=59.0909090909091, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=59.0909090909091, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=46.1538461538462, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPA_BACAN (Q81TW8)

Other databases:

- EMBL:   AE016879
- EMBL:   AE017334
- EMBL:   AE017225
- RefSeq:   NP_843619.1
- RefSeq:   YP_017753.1
- RefSeq:   YP_027326.1
- ProteinModelPortal:   Q81TW8
- SMR:   Q81TW8
- EnsemblBacteria:   EBBACT00000011078
- EnsemblBacteria:   EBBACT00000018522
- EnsemblBacteria:   EBBACT00000023981
- GeneID:   1086206
- GeneID:   2816671
- GeneID:   2852366
- GenomeReviews:   AE016879_GR
- GenomeReviews:   AE017225_GR
- GenomeReviews:   AE017334_GR
- KEGG:   ban:BA_1135
- KEGG:   bar:GBAA_1135
- KEGG:   bat:BAS1054
- TIGR:   BA_1135
- TIGR:   GBAA_1135
- GeneTree:   EBGT00070000031771
- HOGENOM:   HBG717773
- OMA:   ERAGFNT
- ProtClustDB:   CLSK916107
- BioCyc:   BANT260799:BAS1054-MONOMER
- BioCyc:   BANT261594:GBAA1135-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7475; Mature: 7344

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQ
CCCCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AKNVIKL
CCCEECC
>Mature Secondary Structure 
AVTGQVKWFNNEKGFGFIEVPGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRGPQ
CCCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AKNVIKL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629