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The map label for this gene is rapC [H]

Identifier: 49183974

GI number: 49183974

Start: 1009223

End: 1010335

Strand: Direct

Name: rapC [H]

Synonym: BAS0952

Alternate gene names: 49183974

Gene position: 1009223-1010335 (Clockwise)

Preceding gene: 49183973

Following gene: 49183975

Centisome position: 19.3

GC content: 29.11

Gene sequence:

>1113_bases
ATGATTACATCTACTACAAATGAAAAACTGACGCAGCTATTGAATGAATGGTATCTAGAGATTAGATCTAGACGTATAAG
TAATGCAGAACGTCTAAAACAAGAAATTGATTTTAAATTTACTAAACTAAAAAAAGAGACTGGAGAAGGTTTGCAGAACC
AAAATCTATTACTTTATTATTATTTGCTAGAATTTCGATATAACTATTTAATAGATAATCTAGGCTTATCTCAAGAGAGT
TTTAACAAGATAGATTCGTTTGATCAACCAACAGATAATTTTTTAACTTATTATTATTACTTTTTTAAAGCAATACATGC
TAGTGAGTTAGGAAATTTTCATCTCGCTAAAGAACATTACGAAAAGGCTGAAAGTTTTTTGAAGTATGTTCCTGATCAAT
TAGAAAAGGCTGAATTTTATTATAAGTTAGCTACATTTCATTATGATACACAACAAGCTTTGGTATCTATTAAACATGCA
ACGAAGGTAAAGGATATGTATTTAAATCATGATGGATATGAATTAAATGTAGCTTTTTGTGATAATATTTTAGGCTTAGC
CTGTATGAACTTAAAGGAATGGGAATTAGCTGAAGAACATTTCACAGCTGCTATGGATCAATTCCAAAAAATTGGTGAAG
AAAAATTTATTATTATGGTTCGTCATAATTTAGGATGGATGTATTCTACGCAAAATTTATCTGCATTGGCAATTCGTTAT
CTTACTGAAGTAGTAGAAAAATCTCCCCAACATTATAAAGCTCTTTATGTAAAAGCAAAAGAGCATTACAAGTTAAAAGA
GCATGAGATTGCAAATAAGCTTATAGAAAAAGGATTGAAGATTTGTAGAGATTCGAAAATTGAAGGATATCAACACCATT
ATGAAATTTTAAATGCATTAAATCAAGGTGTAAAAGCGGAAGAATTAGAGGACATTATTCTTAGAGGAATTACGTATTTT
GAAAGAGAAGAGTTATATGATTATACTCAGGAGTATCAGGAAAAGTTAGCAGTGAAATTTTATGAAGAAAACCTTTGGGA
AGAGGCAAGTAAGTATTTTTATTTTAGTAAAAAAGCAAGAGAAAAACTTTTTGATAAGGGGGCTTTAAAATGA

Upstream 100 bases:

>100_bases
TTATTGAGGAATATTTATTTGTAGGATGATCGGAATCGATATTTGAATTTTCTGTTATTATTTGTAGAAGAGTACATAAC
AGATGATTAGGAGGGGTTTC

Downstream 100 bases:

>100_bases
AAAAAATGGTAATTAAATTATTAGGGATTGTAACAGTATTTACACTGACTTTAGGGGTGTATAGTTCAACAAATCATCAA
AAAAGTCCAACACTAATGAA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MITSTTNEKLTQLLNEWYLEIRSRRISNAERLKQEIDFKFTKLKKETGEGLQNQNLLLYYYLLEFRYNYLIDNLGLSQES
FNKIDSFDQPTDNFLTYYYYFFKAIHASELGNFHLAKEHYEKAESFLKYVPDQLEKAEFYYKLATFHYDTQQALVSIKHA
TKVKDMYLNHDGYELNVAFCDNILGLACMNLKEWELAEEHFTAAMDQFQKIGEEKFIIMVRHNLGWMYSTQNLSALAIRY
LTEVVEKSPQHYKALYVKAKEHYKLKEHEIANKLIEKGLKICRDSKIEGYQHHYEILNALNQGVKAEELEDIILRGITYF
EREELYDYTQEYQEKLAVKFYEENLWEEASKYFYFSKKAREKLFDKGALK

Sequences:

>Translated_370_residues
MITSTTNEKLTQLLNEWYLEIRSRRISNAERLKQEIDFKFTKLKKETGEGLQNQNLLLYYYLLEFRYNYLIDNLGLSQES
FNKIDSFDQPTDNFLTYYYYFFKAIHASELGNFHLAKEHYEKAESFLKYVPDQLEKAEFYYKLATFHYDTQQALVSIKHA
TKVKDMYLNHDGYELNVAFCDNILGLACMNLKEWELAEEHFTAAMDQFQKIGEEKFIIMVRHNLGWMYSTQNLSALAIRY
LTEVVEKSPQHYKALYVKAKEHYKLKEHEIANKLIEKGLKICRDSKIEGYQHHYEILNALNQGVKAEELEDIILRGITYF
EREELYDYTQEYQEKLAVKFYEENLWEEASKYFYFSKKAREKLFDKGALK
>Mature_370_residues
MITSTTNEKLTQLLNEWYLEIRSRRISNAERLKQEIDFKFTKLKKETGEGLQNQNLLLYYYLLEFRYNYLIDNLGLSQES
FNKIDSFDQPTDNFLTYYYYFFKAIHASELGNFHLAKEHYEKAESFLKYVPDQLEKAEFYYKLATFHYDTQQALVSIKHA
TKVKDMYLNHDGYELNVAFCDNILGLACMNLKEWELAEEHFTAAMDQFQKIGEEKFIIMVRHNLGWMYSTQNLSALAIRY
LTEVVEKSPQHYKALYVKAKEHYKLKEHEIANKLIEKGLKICRDSKIEGYQHHYEILNALNQGVKAEELEDIILRGITYF
EREELYDYTQEYQEKLAVKFYEENLWEEASKYFYFSKKAREKLFDKGALK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 44313; Mature: 44313

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSTTNEKLTQLLNEWYLEIRSRRISNAERLKQEIDFKFTKLKKETGEGLQNQNLLLYY
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEHHH
YLLEFRYNYLIDNLGLSQESFNKIDSFDQPTDNFLTYYYYFFKAIHASELGNFHLAKEHY
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EKAESFLKYVPDQLEKAEFYYKLATFHYDTQQALVSIKHATKVKDMYLNHDGYELNVAFC
HHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHH
DNILGLACMNLKEWELAEEHFTAAMDQFQKIGEEKFIIMVRHNLGWMYSTQNLSALAIRY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCHHHHHHHH
LTEVVEKSPQHYKALYVKAKEHYKLKEHEIANKLIEKGLKICRDSKIEGYQHHYEILNAL
HHHHHHCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
NQGVKAEELEDIILRGITYFEREELYDYTQEYQEKLAVKFYEENLWEEASKYFYFSKKAR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKLFDKGALK
HHHHHCCCCC
>Mature Secondary Structure
MITSTTNEKLTQLLNEWYLEIRSRRISNAERLKQEIDFKFTKLKKETGEGLQNQNLLLYY
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEHHH
YLLEFRYNYLIDNLGLSQESFNKIDSFDQPTDNFLTYYYYFFKAIHASELGNFHLAKEHY
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EKAESFLKYVPDQLEKAEFYYKLATFHYDTQQALVSIKHATKVKDMYLNHDGYELNVAFC
HHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHH
DNILGLACMNLKEWELAEEHFTAAMDQFQKIGEEKFIIMVRHNLGWMYSTQNLSALAIRY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCHHHHHHHH
LTEVVEKSPQHYKALYVKAKEHYKLKEHEIANKLIEKGLKICRDSKIEGYQHHYEILNAL
HHHHHHCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
NQGVKAEELEDIILRGITYFEREELYDYTQEYQEKLAVKFYEENLWEEASKYFYFSKKAR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKLFDKGALK
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]