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The map label for this gene is ycfQ [H]

Identifier: 49183970

GI number: 49183970

Start: 1004773

End: 1005348

Strand: Direct

Name: ycfQ [H]

Synonym: BAS0948

Alternate gene names: 49183970

Gene position: 1004773-1005348 (Clockwise)

Preceding gene: 49183969

Following gene: 49183971

Centisome position: 19.22

GC content: 29.17

Gene sequence:

>576_bases
TTGGGTAGAAAAATTAGCTTTAACAAAGAACGTGCACTAAATAAAGCTATGCATTTATTCTGGGAGAAAGGTTATGACGC
TACATATATATCAGATCTTATTGAAACGATGGGTATAAGTCGCTCTACTCTTTACGATAGCTTTGGAGATAAGGATGCAC
TATTTAAACTCGTTTTAGAACAGTATAAAAACTATGGTTCTCAAAAGAGAAATTTACTTTTTAGTGATACAAATACGAAA
GAATCACTGAAATCCTTTTTTTATCAACATATTGAAAAATGTTATTCAGATGACATTCCAAAAGGTTGTATTATAACTAA
TTCTTCATTGCTGATTGGGCAAATTGATCCTTCCATAGAAGAAATACTCATAAATGATTTTAATGAACTTGAAAAAGCAT
TTAAGCAAGTTATCGAAGAAGGAAAAAAGAAAGGAGAAATTTCACAAGAGGATGACACTGAATTAGTTGCATATTCTTTA
TTAAGTTTAAATCATAGTCTTAATTTAATGTCTATGTATAAAAAAGAGAAAAAGCTAGCATATAATTTAGTTGATAAGGC
TATTGCAGATCTATAG

Upstream 100 bases:

>100_bases
GTGTATGTGTTATATGGAAGAATTGATCTCAAGATGTTTTTTCTGGACTTATCGTTCCAGAAAAATTATACTGAATTATA
TAATAGGGGGGTGTTATTAA

Downstream 100 bases:

>100_bases
TCTTTCTTTTTTAATTGTTTTGGAACGAACGTTCCGAAAGTGGAAGGAATGATAAATTTGACTAAAAAGACAAATTTTCT
AATATTCATTTTAGCAATTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MGRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEQYKNYGSQKRNLLFSDTNTK
ESLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIEEILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAYSL
LSLNHSLNLMSMYKKEKKLAYNLVDKAIADL

Sequences:

>Translated_191_residues
MGRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEQYKNYGSQKRNLLFSDTNTK
ESLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIEEILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAYSL
LSLNHSLNLMSMYKKEKKLAYNLVDKAIADL
>Mature_190_residues
GRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEQYKNYGSQKRNLLFSDTNTKE
SLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIEEILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAYSLL
SLNHSLNLMSMYKKEKKLAYNLVDKAIADL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=178, Percent_Identity=31.4606741573034, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22012; Mature: 21881

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
QYKNYGSQKRNLLFSDTNTKESLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIE
HHHHCCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCHHH
EILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAYSLLSLNHSLNLMSMYKKEKKLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YNLVDKAIADL
HHHHHHHHHCC
>Mature Secondary Structure 
GRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
QYKNYGSQKRNLLFSDTNTKESLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIE
HHHHCCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCHHH
EILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAYSLLSLNHSLNLMSMYKKEKKLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YNLVDKAIADL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]