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The map label for this gene is rbsR [H]

Identifier: 49183656

GI number: 49183656

Start: 682122

End: 683093

Strand: Direct

Name: rbsR [H]

Synonym: BAS0631

Alternate gene names: 49183656

Gene position: 682122-683093 (Clockwise)

Preceding gene: 49183655

Following gene: 49183657

Centisome position: 13.05

GC content: 37.35

Gene sequence:

>972_bases
ATGAGTACGATTAAAGACGTTGCAAAATTAGCGGGAGTATCTGTTTCGACCGTTTCCAGAGTGTTAAATAAAAATGGATA
TGTTCATGAAGATACGTTAAAGAAAGTAGAACGAGCGATTGAGATGCTAGACTATAAGCCTAGTACAGTAGCGCGTTCAC
TGTATAATAAAAAATCTCGTTTAATTGGCTTAGTTGTTCCAAATATCGTGAATCCATTCTTTCCAGAAGTTGCACGTGCC
GTAGAAGATGTAGCGCATAAGCAAGGGTATACAGTTGTACTTTGTAACTCTGATGAAAGTTTAGAGAAAGAAAAGCAATA
TATTGATGTACTTAGGCAAAATAATGTAGATGGATTTATTGTAGCGACAAATCCACAAAATAGTGTGAATTACATGAACT
TGTCAGTACCAGTCGTTGCAATTGACCGTATGTTTAATGAGCGTATACCTGCTGTGTATGCAGATAACTATGCGGGAAGT
CAGGCAGCGACAAAGTTATTAATAGATAAAGGCTGTAAACGTATTGCGCATATTCGTGGACCGCGTGACGTAAGTACAGC
TAATGAACGTTTTGAAGGCTTTGTAGACGTTATTACGCAAAATAATCTTTCTTATATGATTGCAGAGAGTACATTTGATC
CAGCTAATAGTGAGCGTGTAGCGGTGGAACTATTAGAAGAATACCCGCATATTGATGGAATTGTTGCTGGGAATGATTTA
ATTGCAATAGGTATCGTAAAGGCTGCGCTTCAAAAGGGGATTTCTATTCCGGATGATTTACAAATTATCGGATTTGATGG
GATTTCTTTAACAGAGATGATGTATCCATCTATTACAACTGTTGCGCAGCCAATTTATGAAATGGGGAAAGTTGCAACAG
AACTGTTGTTAGAGCAGATGGAAGGAAACGTATTAGAAGAGAAACACTATCGTTTACCGATTGAAATTATAGAACGAAAT
ACAACGAAGTAA

Upstream 100 bases:

>100_bases
ATAACCTTAAAAGCTTTTTCTTGAGAAATGATTGACGTATTTCTAGAAATACGTTATATTATTTTCTGTAAACGGTTACA
TGAAATGGAGAGAGAAGAGA

Downstream 100 bases:

>100_bases
GGAGATGAAATAGATGCCAAATATTGCAGTAGTAGGTAGTATTTCAATGGACTTAGTGGCCGTTTCAAAAAAACGTCCGA
AAGCAGGGGAAACAGTAATT

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSTIKDVAKLAGVSVSTVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPAVYADNYAGS
QAATKLLIDKGCKRIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAVELLEEYPHIDGIVAGNDL
IAIGIVKAALQKGISIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKVATELLLEQMEGNVLEEKHYRLPIEIIERN
TTK

Sequences:

>Translated_323_residues
MSTIKDVAKLAGVSVSTVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPAVYADNYAGS
QAATKLLIDKGCKRIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAVELLEEYPHIDGIVAGNDL
IAIGIVKAALQKGISIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKVATELLLEQMEGNVLEEKHYRLPIEIIERN
TTK
>Mature_322_residues
STIKDVAKLAGVSVSTVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARAV
EDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPAVYADNYAGSQ
AATKLLIDKGCKRIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAVELLEEYPHIDGIVAGNDLI
AIGIVKAALQKGISIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKVATELLLEQMEGNVLEEKHYRLPIEIIERNT
TK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=330, Percent_Identity=33.6363636363636, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1790369, Length=329, Percent_Identity=31.306990881459, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1787948, Length=332, Percent_Identity=31.3253012048193, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1788474, Length=313, Percent_Identity=34.8242811501597, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1789068, Length=300, Percent_Identity=32.3333333333333, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=32.3232323232323, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787580, Length=313, Percent_Identity=30.0319488817891, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI48994940, Length=316, Percent_Identity=27.8481012658228, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790715, Length=332, Percent_Identity=25.6024096385542, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786540, Length=326, Percent_Identity=26.3803680981595, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=28.0597014925373, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786268, Length=307, Percent_Identity=23.4527687296417, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790689, Length=306, Percent_Identity=24.5098039215686, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789456, Length=322, Percent_Identity=25.776397515528, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790192, Length=270, Percent_Identity=25.5555555555556, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35892; Mature: 35760

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIKDVAKLAGVSVSTVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSR
CCHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEVARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPQNSVNYMNLSVPVVAIDRMFNERIPAVYADNYAGSQAATKLLIDKGCKRIAHIRG
EEECCCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAVELLEEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCC
IAIGIVKAALQKGISIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKVATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGNVLEEKHYRLPIEIIERNTTK
CCCCCCHHHCCCCHHEECCCCCC
>Mature Secondary Structure 
STIKDVAKLAGVSVSTVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSR
CHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEVARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPQNSVNYMNLSVPVVAIDRMFNERIPAVYADNYAGSQAATKLLIDKGCKRIAHIRG
EEECCCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAVELLEEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCC
IAIGIVKAALQKGISIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKVATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGNVLEEKHYRLPIEIIERNTTK
CCCCCCHHHCCCCHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]