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The map label for this gene is yhdI [H]

Identifier: 49183577

GI number: 49183577

Start: 591709

End: 593109

Strand: Direct

Name: yhdI [H]

Synonym: BAS0551

Alternate gene names: 49183577

Gene position: 591709-593109 (Clockwise)

Preceding gene: 49183574

Following gene: 49183583

Centisome position: 11.32

GC content: 35.47

Gene sequence:

>1401_bases
ATGTTAGAATTAACGCCTAATTTAAATATGAATAGTAAAAAGGCATTGTACGTGCAATTGTATGAGTATATAAAAAAAGA
GATTAAGGATGGAACGATTTCCGCTTTTACAAAATTACCCGCAAAGAGAAAGCTGGCGGGCTATTTACAAGTGAGTAAGA
ATACAATAGAAGCGGCTTACGAGCAATTACTTGCAGAAGGTTACATTGAGTCGATATCAAGAAAAGGTTATTTTGTATGT
GAATTTGAACAAATGATGGATGTAGAAGGAAGTGAAGCAGAAGTAGAAGAAATACCGTTTCGGGAGGGGAACTATACATT
CGATTTCACCCAAACAGGGGTTGATACGAATACTTTTCCTTTCACTACGTACCGCAAGCTTATAAATGATGTATGGCAGC
CGCATAATAATGACTTGCTTTTTCTTGGACACCCTCAAGGGGAATTAAGCTTAAGAGAGGAAATTGCGAACTATTTGTAT
GAATCTAGGGGTGTGCGTTGCTCAGCTAGTCAAATTGTATTAGGGGCGGGAACACAAATATTAGTGAAGTTACTTTTTCA
ATTGTTGAAGGGAAGTAATTATGCTGTTGAAAATCCAGGGTACCATAGGAAAATGGTCGTTTTTGAACAGGGAGAAAAGA
AGGTTCAAATGTTGTCTTTAGATAGGGACGGAATTTGTATGGCAGATTTAGAAAATAGCGATGCAAATGTTGTATTTGTA
ACGCCCTCTCATCAATTCCCATATGGAATGATTATGCCTATTACGAGAAGGACGCAGCTTTTACAATGGGCGAAGAAAGA
AGAAGACAGGTATATTATTGAAGATGATTACGATAGTGAATTTCGTTATTCAGGAAGGCCAATTCCGGCACTACAAGGGT
TAGATACAGATGGGAAAGTTATTTATATGGGGACGTTATCAAAAGCTTTGTTGCCCTCATTACGGATGAGCTATATAGTA
TTACCGAAGAATTTAATTAAAAAGTATCAAAAAGAATATTTGTTTTATACACAAAGTGTTTCAAGAATGGATCAAGAAGT
GATTAGAAAGTTTTTAAATGAAGGTTATTGGGAAAAACATATTCATAAAATGCGTGTTGTCTACCGAAAAAAGAGGGATC
GACTCGTCTTTGAGATAGAGAAGTATTTCTCTAATCGTGTTGAGGTAATAGGAGAAGATTCGGGATTACACATTTTATTA
AAAGTGCATAATGGAATGCGAGAAGAAGAATTAATTAAAGCAGCTGCAAAATATAGTATTAAAATATATCCTTTTTCGAC
GTACTACAAAGACGATACTGCACCTGAAAATGTAGTTTTACTTGGATTTGCGATATTATCAGAGGAAGAAATTGCGAAAG
CGATTCAATTATTACATAAGGCATGGTTTACAAGAAAGTAA

Upstream 100 bases:

>100_bases
GTATTTGATTTTTTGTGTGTGACATGATAAAAGGAATTATATATAACTTCTGGTACTGTAAAAAGTATCAGATTTTAGTT
TTATTAAGGGGTCAGATATT

Downstream 100 bases:

>100_bases
AAAAACATCCTCCAAACATGAGGATGTTTTTTATTATTTATTTTCATCTAAGAATAAGACCATATGCTCTTCGTCCCAAT
ATTGACCATTATATTTTAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLAGYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
EFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKLINDVWQPHNNDLLFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEKKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGRPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKAAAKYSIKIYPFSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK

Sequences:

>Translated_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLAGYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
EFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKLINDVWQPHNNDLLFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEKKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGRPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKAAAKYSIKIYPFSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
>Mature_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLAGYLQVSKNTIEAAYEQLLAEGYIESISRKGYFVC
EFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFPFTTYRKLINDVWQPHNNDLLFLGHPQGELSLREEIANYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEKKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGRPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKAAAKYSIKIYPFSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=308, Percent_Identity=22.7272727272727, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI33469970, Length=308, Percent_Identity=22.7272727272727, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI1787710, Length=439, Percent_Identity=25.0569476082005, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790797, Length=403, Percent_Identity=24.8138957816377, Blast_Score=102, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54172; Mature: 54172

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLAGYLQVSKNTIEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESISRKGYFVCEFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFP
HHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
FTTYRKLINDVWQPHNNDLLFLGHPQGELSLREEIANYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEKKVQMLSLDRDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGRPIPALQGLDTDGKV
ECCCCCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCHHCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILLKVHNGMREEELIKAAAKYSI
HHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPFSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
EEEEEEEECCCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGTISAFTKLPAKRKLAGYLQVSKNTIEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESISRKGYFVCEFEQMMDVEGSEAEVEEIPFREGNYTFDFTQTGVDTNTFP
HHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCC
FTTYRKLINDVWQPHNNDLLFLGHPQGELSLREEIANYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEKKVQMLSLDRDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGRPIPALQGLDTDGKV
ECCCCCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCHHCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILLKVHNGMREEELIKAAAKYSI
HHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPFSTYYKDDTAPENVVLLGFAILSEEEIAKAIQLLHKAWFTRK
EEEEEEEECCCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]