| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447560
Identifier: 46447560
GI number: 46447560
Start: 2292758
End: 2295043
Strand: Direct
Name: 46447560
Synonym: pc1926
Alternate gene names: NA
Gene position: 2292758-2295043 (Clockwise)
Preceding gene: 46447559
Following gene: 46447561
Centisome position: 94.96
GC content: 40.16
Gene sequence:
>2286_bases ATGGATGAAAATAATCCCTTAGTCAATCCTTTGGCTAATACAGAGGAAACTGGTGCGTCAACGATTCCAGCTCCCGCTCT TGCACCTTCATCTGAAGAAATTCAACTAAGCTTTCAAGAGGGAACTTCTCTGACTATTTCTCACTCTCAGCTAGCTTTTT TAAGGGACAAATCGCCCTATTTTAAGAATCTGTGGTCGGGGCAATTTCAAGAAACCCTGCAACACCCTCTCGCTTTGACA CAAAAAGAGTTTGCGCTTTTGCTCAATTGCTTAACGAATCCTAAGTTTGAAATTCCCTTGGAAGAGATCACCTCTGCCAT GCAGCTAGCAGATTCTTATGAATTGACAGAAGTGATGAAAAATTTAGAAGAGCAGTTGATTGATGGATACAAAACACAAA GATTTGAACCCTTTAACTCCACTAAAGAGAGTTTAGTCGAATTCAAAGAACTTTTAAATTTTGCACATCTTTACCAATTA AATACATTGAAGAACTATTTAGAGTTCACCGTTGTGAGCGAATTGTTAAACCAGACTTCTCAGCTAGCGGAATTTGAAAG AATTATAAATCACTTCTCAAAAAAGATAGAGAGACTTAATTTTTCAAATCAGGTTTATTTAACAAATGCCCATCTTTTAG CATTAAAAGATTGTAAGAATTTAAAAGCACTTCATTTAGAGGCATGTCAGGCTCTCACTGATGACGGTTTGGAGCATTTG ACGCTCTTAACGGCTTTGCAGCATCTAAATTTAAGCAGATGCAAAAATCTCACCGATGCAGGATTGGCGCATTTAACACC CTTAACGGGCTTACAGTATCTTGATTTAAGCCATTGCAATAAATTTACCGACGCAGGATTAGCGTATTTGGAAATTTTAA CAGCTTTGCAGCATCTTGACCTAAGGGGATGTGACAAAATCACGGATGCTGGATTATCGCATTTGACACCCTTGGTGGCC TTGCAATATCTAAGTCTAAGCCAATGTTGGAATCTCACTGATGCAGGATTAATTCATTTGAAACCCTTGACGGCTTTGCA GTATCTAAATCTAAGCAGATGCAATAAACTCACTGATGCTGGATTAGAGCATTTGGCGCTCTTAACGTCTTTGCAGCATC TAAATTTAAGCAGTTGCAAAAAACTCACCGATGCGGGATTAGCGCATCTGACACCCTTAATGGCTTTGCAGCATCTAGAT CTAAGCATATGCAATAAACTCACTGATAGGGGATTGACGCATTTGAACCCCTTGACGGCTTTGCAGTATCTAAATCTAAG CCAATGTGATAATATCACTAATGCTGGATTAGAGCATTTGATACCCTTAACGGCTTTGCAGTATCTAAATCTAAGCCAAT GTGAAAAACTCACTGATGCTGGATTAGAGCATTTGACACCCTTAACGGCTTTGCAACAACTAGATCTAAGCTGGTGCTAT AAACTCACCGATGCTGGATTTGCCCATCTGACACCTTTAACGGGCTTACAGTATCTTGATTTAAGCCATTGCAATAAACT TACCGATGCAGGATTAGCCCATTTGACACCCTTAACGGCTTTGCAGTATTTAGATCTAAGCAATTGTATAAAACTCACTG ACGATGGATTAGCGCATTTGACACCCTTAATGGCTTTGCAGCATCTAAATCTAAGCAGTTGCTATAAACTCACCGATGCT GGATTTGCCCATCTGTCACCCTTAACGGCTTTGCAGCGTCTAGATTTGAGCTACTGTCAGAATCTCACGGATGCAGAATT AGCCCATTTAACACCCTTAACAGCTTTACAACGTCTAGATTTGCGCTACTGTGAGAATCTCACGGATGCAGGATTAGTCC ATTTGAAACTCTTAACGGATTTGCAGTATCTAAATCTGAGAGGATGTGGGTATCTTACTGACGCTGGATTAGCCCATTTG ACAACTTTATCAGGTTTACAGCATCTAGATTTAAGCAGTTGTGAGAAACTCACGGATGCAGGATTAGTCCATTTGAAACT CTTAACGGATTTGCAGTATCTAAATCTAAGCAGGTGTGAAAATCTCACTGATGAAGGATTAGCCCTTTTGACACCTTTAA CGGCTTTGCAGCATCTGAAACTACGCTACTGTATAAATCTCACCGATGCAGGATTAGCCCATTTGACACCCTTAACGGGA TTGCAGCGTCTAGATTTAAGCCAATGCTGGAACCTTACTGATGCAGGATTAATTCATTTGAAACTCTTAACGGCTTTGCA GCATCTAAATCTGAGCGATACTAACATTTCACCGATGCAGGATTAG
Upstream 100 bases:
>100_bases GGTTATTTTGAATATTTCTAATTTTGGGTTTAATCCTAGTTATCTTATCCATACAACGGCTCCTTCTTACTCTCAATCTC AAGAAATTAATGACCCTGTT
Downstream 100 bases:
>100_bases CGCATTTAACACCCTTAACGGCTTTGCAGCATCTAGATCTAAGCTTTTGTAATAATCTCACTGGGGATGGATTAGCCCAT TTGACACCCTTAACGGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 761; Mature: 761
Protein sequence:
>761_residues MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPYFKNLWSGQFQETLQHPLALT QKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMKNLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQL NTLKNYLEFTVVSELLNQTSQLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVA LQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLD LSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDA GFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHL TTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD
Sequences:
>Translated_761_residues MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPYFKNLWSGQFQETLQHPLALT QKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMKNLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQL NTLKNYLEFTVVSELLNQTSQLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVA LQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLD LSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDA GFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHL TTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD >Mature_761_residues MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPYFKNLWSGQFQETLQHPLALT QKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMKNLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQL NTLKNYLEFTVVSELLNQTSQLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVA LQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLD LSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDA GFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHL TTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=303, Percent_Identity=36.963696369637, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI161333852, Length=557, Percent_Identity=26.032315978456, Blast_Score=151, Evalue=3e-36, Organism=Homo sapiens, GI284447308, Length=348, Percent_Identity=33.3333333333333, Blast_Score=133, Evalue=6e-31, Organism=Homo sapiens, GI161333854, Length=488, Percent_Identity=26.0245901639344, Blast_Score=133, Evalue=7e-31, Organism=Homo sapiens, GI6912466, Length=296, Percent_Identity=32.4324324324324, Blast_Score=123, Evalue=6e-28, Organism=Homo sapiens, GI27734755, Length=337, Percent_Identity=32.0474777448071, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI296531375, Length=305, Percent_Identity=32.1311475409836, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI284447314, Length=241, Percent_Identity=34.8547717842324, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI289666746, Length=300, Percent_Identity=33, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI255683361, Length=315, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI16306588, Length=278, Percent_Identity=30.9352517985612, Blast_Score=68, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25151694, Length=331, Percent_Identity=30.2114803625378, Blast_Score=113, Evalue=4e-25, Organism=Caenorhabditis elegans, GI25151696, Length=331, Percent_Identity=30.2114803625378, Blast_Score=113, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6322549, Length=353, Percent_Identity=27.4787535410765, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI17647819, Length=302, Percent_Identity=36.7549668874172, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI21357913, Length=279, Percent_Identity=33.6917562724014, Blast_Score=112, Evalue=1e-24, Organism=Drosophila melanogaster, GI24662818, Length=276, Percent_Identity=36.231884057971, Blast_Score=109, Evalue=7e-24, Organism=Drosophila melanogaster, GI161076545, Length=314, Percent_Identity=31.8471337579618, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24652783, Length=314, Percent_Identity=31.5286624203822, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076549, Length=314, Percent_Identity=32.1656050955414, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076547, Length=314, Percent_Identity=31.8471337579618, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI19921840, Length=383, Percent_Identity=30.2872062663185, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI24646754, Length=279, Percent_Identity=29.3906810035842, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84544; Mature: 84544
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHCCCCCH FKNLWSGQFQETLQHPLALTQKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMK HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH NLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQLNTLKNYLEFTVVSELLNQTS HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL HHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHCCHHHHHHHHHHHHHHCHHHHH TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLD HHHHHHHHCCHHHHCCCHHCCHHHHCHHCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHCC LRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDA CCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCHHHHHHHHHH GLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTA HHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH LQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY HHHCCHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL HHHCCCCHHCCHHCCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHCCCCCCHHHH TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLD HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHH LRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDA HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHC GLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG CHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHCHHHH LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD HHHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHCCCCCH FKNLWSGQFQETLQHPLALTQKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMK HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH NLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQLNTLKNYLEFTVVSELLNQTS HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL HHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHCCHHHHHHHHHHHHHHCHHHHH TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLD HHHHHHHHCCHHHHCCCHHCCHHHHCHHCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHCC LRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDA CCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCHHHHHHHHHH GLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTA HHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH LQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY HHHCCHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL HHHCCCCHHCCHHCCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHCCCCCCHHHH TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLD HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHH LRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDA HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHC GLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG CHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHCHHHH LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD HHHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA