| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447533
Identifier: 46447533
GI number: 46447533
Start: 2262376
End: 2263794
Strand: Reverse
Name: 46447533
Synonym: pc1899
Alternate gene names: NA
Gene position: 2263794-2262376 (Counterclockwise)
Preceding gene: 46447535
Following gene: 46447532
Centisome position: 93.76
GC content: 35.73
Gene sequence:
>1419_bases ATGATCAATCGCTGGTTAATGGGCTTAAATTCTATTATCTTAGGAAGCTGTTGTCTTTTAGCTATTGGAATTGGAGTGAT GAAGTTTACTTATTCCAATCAGATTATTTGTAGAGATCCTAAGGCAAACCTATGTGGATTGCCAAAAGGAGCTTTTGAAT TATCAACAGAGTCTTATGAACAGTTAAATGGCCCTTTATTAGCTTTAAATGAAGCTTCTCCTTCTTTGCAGCTTCCCGAT TTGCGACAACAATTGATTTATTATGGAAAAAACAGTAGACCAGATGCTCAGTCTGAACAAACCTTGTTGCATTTTGCTTT TAATACAAATAAAAATATTGTATCGATTTCTCCTGGGGAGCGACTTTACTTAGTTTACGATAAAGAAAGTGTTCCAAATA AATACGTTTTTAGTCCTCAGAATAAAAAAACGTCTTTGTGGATAGAAGCAATGTTGGCTGATTCTGAAGTTGTTGTTAAG TTAACTTTGGAAAATGACAAAGGAGACTTGATTACAGAGCCTGAAAATCATTATCAATTTCGACTTCCTGAAAAAGAATT CATTCGCTTTGCTGGGAAAGTTTGGGAATTGGGAACATGGAGAGTCGATGGAACACTTTTAGCCAGACAAAAAGCGCGCT GGTTTGGGATTGATCGGTTTTTAGAAAAGCACGGAGGAGACGAATACCAACACTGCTTGGGCAAACAAAGAGTCGATTTT GGGGAAAATGAAAATATTTATTCTGTTTTTATTGGCCCTGGAGATTGTTTAATTTGGGATGAAAATCAATGGAAAGTCAT TCAACCAGGAGCAGGTTCACGGGCTTATCCACTTTTGGTCGTCAAAAAAATTGATGAGCGATTATTGACTTTGGAATTGT GGGATGTAGAAGGGAAAGGTAAGATCCTGTTGAATTTATTAAAATCTGTTGAACCTTGGATGGTACAAAATGCTCAAAAT ATTCAACATATGTTTAAATTTGTCGGGGCCAAAACAAGGTCGCAATGTGTATTTGAAATTAATAATGAAAGAATGATTGT TAGTCCTTCCGACTGGCTTTTGATGACTCAGAAAGGATGGAAAAAACTTACTTCTGCTGAGGAAATAGATGATTATGTAA AGCGTAAAACGGCTGGGACATTGTTTGTATTTGAAAGATTAGTGCGTAAAGATGATCGCCAATTGATGTTGGGAACTTTA TATAATTCTACTCGTAGTGATAGTCAATCAATTGAACTGACTTTACAGCAAGGTAATAGCAATAAATCTTTTACAACTAA AGAAATGAAGGATAAAGAGGTTAAAGAGCCAGGAGAAACGATTTTGCAAACAGAAAAAGGGATTACTAGTGTTGGTAAGA CTGAAGCTGATTTGGCAAATCGTATTCCAGTTGTTCCTAATCTCTCGAATAAGAATTAA
Upstream 100 bases:
>100_bases TGATATGAGTTTTTACTAATTGTTTGTTTTTTTTAAATAAAAATGACATAATCCATTATTAATCAATAGGTAAATCTAAA AATAAAAAAAAGAGAAACAG
Downstream 100 bases:
>100_bases AACAAGGCTTCTTATAAAGTTGTGTGTTGAATGACAATAGATTTCATTGACACTGAATTAAATTTGGTAAGAGTAGATTA AAGCGAATCGACGGTAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MINRWLMGLNSIILGSCCLLAIGIGVMKFTYSNQIICRDPKANLCGLPKGAFELSTESYEQLNGPLLALNEASPSLQLPD LRQQLIYYGKNSRPDAQSEQTLLHFAFNTNKNIVSISPGERLYLVYDKESVPNKYVFSPQNKKTSLWIEAMLADSEVVVK LTLENDKGDLITEPENHYQFRLPEKEFIRFAGKVWELGTWRVDGTLLARQKARWFGIDRFLEKHGGDEYQHCLGKQRVDF GENENIYSVFIGPGDCLIWDENQWKVIQPGAGSRAYPLLVVKKIDERLLTLELWDVEGKGKILLNLLKSVEPWMVQNAQN IQHMFKFVGAKTRSQCVFEINNERMIVSPSDWLLMTQKGWKKLTSAEEIDDYVKRKTAGTLFVFERLVRKDDRQLMLGTL YNSTRSDSQSIELTLQQGNSNKSFTTKEMKDKEVKEPGETILQTEKGITSVGKTEADLANRIPVVPNLSNKN
Sequences:
>Translated_472_residues MINRWLMGLNSIILGSCCLLAIGIGVMKFTYSNQIICRDPKANLCGLPKGAFELSTESYEQLNGPLLALNEASPSLQLPD LRQQLIYYGKNSRPDAQSEQTLLHFAFNTNKNIVSISPGERLYLVYDKESVPNKYVFSPQNKKTSLWIEAMLADSEVVVK LTLENDKGDLITEPENHYQFRLPEKEFIRFAGKVWELGTWRVDGTLLARQKARWFGIDRFLEKHGGDEYQHCLGKQRVDF GENENIYSVFIGPGDCLIWDENQWKVIQPGAGSRAYPLLVVKKIDERLLTLELWDVEGKGKILLNLLKSVEPWMVQNAQN IQHMFKFVGAKTRSQCVFEINNERMIVSPSDWLLMTQKGWKKLTSAEEIDDYVKRKTAGTLFVFERLVRKDDRQLMLGTL YNSTRSDSQSIELTLQQGNSNKSFTTKEMKDKEVKEPGETILQTEKGITSVGKTEADLANRIPVVPNLSNKN >Mature_472_residues MINRWLMGLNSIILGSCCLLAIGIGVMKFTYSNQIICRDPKANLCGLPKGAFELSTESYEQLNGPLLALNEASPSLQLPD LRQQLIYYGKNSRPDAQSEQTLLHFAFNTNKNIVSISPGERLYLVYDKESVPNKYVFSPQNKKTSLWIEAMLADSEVVVK LTLENDKGDLITEPENHYQFRLPEKEFIRFAGKVWELGTWRVDGTLLARQKARWFGIDRFLEKHGGDEYQHCLGKQRVDF GENENIYSVFIGPGDCLIWDENQWKVIQPGAGSRAYPLLVVKKIDERLLTLELWDVEGKGKILLNLLKSVEPWMVQNAQN IQHMFKFVGAKTRSQCVFEINNERMIVSPSDWLLMTQKGWKKLTSAEEIDDYVKRKTAGTLFVFERLVRKDDRQLMLGTL YNSTRSDSQSIELTLQQGNSNKSFTTKEMKDKEVKEPGETILQTEKGITSVGKTEADLANRIPVVPNLSNKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53842; Mature: 53842
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINRWLMGLNSIILGSCCLLAIGIGVMKFTYSNQIICRDPKANLCGLPKGAFELSTESYE CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCCCCEECCCHHHH QLNGPLLALNEASPSLQLPDLRQQLIYYGKNSRPDAQSEQTLLHFAFNTNKNIVSISPGE HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCC RLYLVYDKESVPNKYVFSPQNKKTSLWIEAMLADSEVVVKLTLENDKGDLITEPENHYQF EEEEEECCCCCCCCEEECCCCCCCEEEEEEEECCCEEEEEEEEECCCCCEECCCCCCEEE RLPEKEFIRFAGKVWELGTWRVDGTLLARQKARWFGIDRFLEKHGGDEYQHCLGKQRVDF ECCHHHHHHHHHHEEECEEEEECCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC GENENIYSVFIGPGDCLIWDENQWKVIQPGAGSRAYPLLVVKKIDERLLTLELWDVEGKG CCCCCEEEEEECCCCEEEEECCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC KILLNLLKSVEPWMVQNAQNIQHMFKFVGAKTRSQCVFEINNERMIVSPSDWLLMTQKGW HHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCEEEEECHHH KKLTSAEEIDDYVKRKTAGTLFVFERLVRKDDRQLMLGTLYNSTRSDSQSIELTLQQGNS HHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCC NKSFTTKEMKDKEVKEPGETILQTEKGITSVGKTEADLANRIPVVPNLSNKN CCCEECHHHCCHHHCCCCHHHHHHHCCCHHCCCCHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MINRWLMGLNSIILGSCCLLAIGIGVMKFTYSNQIICRDPKANLCGLPKGAFELSTESYE CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCCCCEECCCHHHH QLNGPLLALNEASPSLQLPDLRQQLIYYGKNSRPDAQSEQTLLHFAFNTNKNIVSISPGE HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCC RLYLVYDKESVPNKYVFSPQNKKTSLWIEAMLADSEVVVKLTLENDKGDLITEPENHYQF EEEEEECCCCCCCCEEECCCCCCCEEEEEEEECCCEEEEEEEEECCCCCEECCCCCCEEE RLPEKEFIRFAGKVWELGTWRVDGTLLARQKARWFGIDRFLEKHGGDEYQHCLGKQRVDF ECCHHHHHHHHHHEEECEEEEECCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC GENENIYSVFIGPGDCLIWDENQWKVIQPGAGSRAYPLLVVKKIDERLLTLELWDVEGKG CCCCCEEEEEECCCCEEEEECCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC KILLNLLKSVEPWMVQNAQNIQHMFKFVGAKTRSQCVFEINNERMIVSPSDWLLMTQKGW HHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCEEEEECHHH KKLTSAEEIDDYVKRKTAGTLFVFERLVRKDDRQLMLGTLYNSTRSDSQSIELTLQQGNS HHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCC NKSFTTKEMKDKEVKEPGETILQTEKGITSVGKTEADLANRIPVVPNLSNKN CCCEECHHHCCHHHCCCCHHHHHHHCCCHHCCCCHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA