Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46447518

Identifier: 46447518

GI number: 46447518

Start: 2245646

End: 2246740

Strand: Direct

Name: 46447518

Synonym: pc1884

Alternate gene names: NA

Gene position: 2245646-2246740 (Clockwise)

Preceding gene: 46447517

Following gene: 46447534

Centisome position: 93.01

GC content: 32.33

Gene sequence:

>1095_bases
GTGATTTTTTGGATCCGATTCATCCTATTCCTCCCTATATTCCTTCAAGCAGAATTAACATGGAATACTATCCAAAATGA
TATTTCTATTGGATTAGAATTTTCTTCAGAACATATAACCTTAGAGCAGCCTTTGACTGTGAAGGCGAACATACATTCTC
CCTCTTCTGATAAAATGAATAAAAATATGCTTATCCATCAATTGACACATTCATTTAATCCCCTTCAGCCAGTTTTTGCA
ATCCAGGAAGTTATTCAAACATCCCAAGAAGAAAATCAAAAACAACGTACAAACTTTTCTCTTATCCTTTCTCCATTGCA
AGTTGGAGAAATTCCTTTATCCTTTTTAAATATTTTATTTGAAACAACAAAGGAAGAGAAAATCAAAAATATTTTTACAC
CCATTTTTTCTATCGAAGTGGCAAATTCCGAAGAATTGGATAAACAATTCTTACCTATTGCACCCTTATTCTCCATTGAT
CGTCAATTTCCTTTAACATTAACAGAAAGTAACCGAATTGATATCTACGAAAATAAAAAACAACTGGATTTAGAAGCAGA
AAGAAATCAAAAAATTTTTTCAGAAAGGACGGTTCCTTGGCTAACAATCCTGCTGTTATTGTGTTTACTGCTTGCCTGGT
ATGGACGAAATATATTTTTCCTCAGGCATATAACTTTGCTCTCAGAAAAATCCCCAGAATTAAACGCTCAACAAACTTTA
TTGCTATTAAAACAAGAACAACTTCCCCAACAAGGTTTATACAAATCTTTTTACACACAACTTCAAGATCTACTTTTATC
GTATTTAGAAAAGCATTTAAAGATGCGCTTAAAATCTTTCACTGCAGAAGAGTTACATTTTCAACTTATTCAATCTAATT
TTTCCCCCACATGGATTGATCCCATTATCAATTTCGTAAAAAAAGCCAATCAAATTAGATTTTCTAATGATCCTCTCATA
AATATAGAATGGGAGATGGATGAAAAACTTGTGGAAACAATTGTTTTTTCTCACCCATCCAGCAATCAACTTCAGCGTAT
TTCTCTAAAATCTTCTCGTTTTACTTCTGGTGAAAATAAAGAGCTTTCTAGTTGA

Upstream 100 bases:

>100_bases
AAAAAACATTTGCCAAAGCTGGCGCAGCATGGATTTCAATTCGAACAGATGAATCTTCTACTCAAGCATTGTATAACTTT
TTTAAATTTAGGCATAAAAA

Downstream 100 bases:

>100_bases
AAGTCATTAGAACAAACAAAGAACATCTATTTTTTGCACAGGAAGGAACAAGCCTCGCTCGTAACTCCGATTAAAAAAGA
GAAATGCATAAAAAAAAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MIFWIRFILFLPIFLQAELTWNTIQNDISIGLEFSSEHITLEQPLTVKANIHSPSSDKMNKNMLIHQLTHSFNPLQPVFA
IQEVIQTSQEENQKQRTNFSLILSPLQVGEIPLSFLNILFETTKEEKIKNIFTPIFSIEVANSEELDKQFLPIAPLFSID
RQFPLTLTESNRIDIYENKKQLDLEAERNQKIFSERTVPWLTILLLLCLLLAWYGRNIFFLRHITLLSEKSPELNAQQTL
LLLKQEQLPQQGLYKSFYTQLQDLLLSYLEKHLKMRLKSFTAEELHFQLIQSNFSPTWIDPIINFVKKANQIRFSNDPLI
NIEWEMDEKLVETIVFSHPSSNQLQRISLKSSRFTSGENKELSS

Sequences:

>Translated_364_residues
MIFWIRFILFLPIFLQAELTWNTIQNDISIGLEFSSEHITLEQPLTVKANIHSPSSDKMNKNMLIHQLTHSFNPLQPVFA
IQEVIQTSQEENQKQRTNFSLILSPLQVGEIPLSFLNILFETTKEEKIKNIFTPIFSIEVANSEELDKQFLPIAPLFSID
RQFPLTLTESNRIDIYENKKQLDLEAERNQKIFSERTVPWLTILLLLCLLLAWYGRNIFFLRHITLLSEKSPELNAQQTL
LLLKQEQLPQQGLYKSFYTQLQDLLLSYLEKHLKMRLKSFTAEELHFQLIQSNFSPTWIDPIINFVKKANQIRFSNDPLI
NIEWEMDEKLVETIVFSHPSSNQLQRISLKSSRFTSGENKELSS
>Mature_364_residues
MIFWIRFILFLPIFLQAELTWNTIQNDISIGLEFSSEHITLEQPLTVKANIHSPSSDKMNKNMLIHQLTHSFNPLQPVFA
IQEVIQTSQEENQKQRTNFSLILSPLQVGEIPLSFLNILFETTKEEKIKNIFTPIFSIEVANSEELDKQFLPIAPLFSID
RQFPLTLTESNRIDIYENKKQLDLEAERNQKIFSERTVPWLTILLLLCLLLAWYGRNIFFLRHITLLSEKSPELNAQQTL
LLLKQEQLPQQGLYKSFYTQLQDLLLSYLEKHLKMRLKSFTAEELHFQLIQSNFSPTWIDPIINFVKKANQIRFSNDPLI
NIEWEMDEKLVETIVFSHPSSNQLQRISLKSSRFTSGENKELSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42625; Mature: 42625

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFWIRFILFLPIFLQAELTWNTIQNDISIGLEFSSEHITLEQPLTVKANIHSPSSDKMN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCEEEEEECCCCCCCCHH
KNMLIHQLTHSFNPLQPVFAIQEVIQTSQEENQKQRTNFSLILSPLQVGEIPLSFLNILF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHCCCCHHHHHHHH
ETTKEEKIKNIFTPIFSIEVANSEELDKQFLPIAPLFSIDRQFPLTLTESNRIDIYENKK
HHHHHHHHHHHHHHHHEEEECCCHHHHHHCCCCCCHHHCCCCCCEEEECCCCEEEEECCC
QLDLEAERNQKIFSERTVPWLTILLLLCLLLAWYGRNIFFLRHITLLSEKSPELNAQQTL
CCCCCHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHH
LLLKQEQLPQQGLYKSFYTQLQDLLLSYLEKHLKMRLKSFTAEELHFQLIQSNFSPTWID
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
PIINFVKKANQIRFSNDPLINIEWEMDEKLVETIVFSHPSSNQLQRISLKSSRFTSGENK
HHHHHHHHHCCEEECCCCEEEEEECHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCC
ELSS
CCCC
>Mature Secondary Structure
MIFWIRFILFLPIFLQAELTWNTIQNDISIGLEFSSEHITLEQPLTVKANIHSPSSDKMN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCEEEEEECCCCCCCCHH
KNMLIHQLTHSFNPLQPVFAIQEVIQTSQEENQKQRTNFSLILSPLQVGEIPLSFLNILF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHCCCCHHHHHHHH
ETTKEEKIKNIFTPIFSIEVANSEELDKQFLPIAPLFSIDRQFPLTLTESNRIDIYENKK
HHHHHHHHHHHHHHHHEEEECCCHHHHHHCCCCCCHHHCCCCCCEEEECCCCEEEEECCC
QLDLEAERNQKIFSERTVPWLTILLLLCLLLAWYGRNIFFLRHITLLSEKSPELNAQQTL
CCCCCHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHH
LLLKQEQLPQQGLYKSFYTQLQDLLLSYLEKHLKMRLKSFTAEELHFQLIQSNFSPTWID
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
PIINFVKKANQIRFSNDPLINIEWEMDEKLVETIVFSHPSSNQLQRISLKSSRFTSGENK
HHHHHHHHHCCEEECCCCEEEEEECHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCC
ELSS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA