| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447499
Identifier: 46447499
GI number: 46447499
Start: 2224854
End: 2225714
Strand: Direct
Name: 46447499
Synonym: pc1865
Alternate gene names: NA
Gene position: 2224854-2225714 (Clockwise)
Preceding gene: 46447498
Following gene: 46447500
Centisome position: 92.15
GC content: 35.42
Gene sequence:
>861_bases ATGGCACCCCGTCAAATTCCAAATTTAGGCATTGGTATTGGATTACGTTTTCCCCATTTAGAAGATATTTTTAAATTCAA GCCAGAAATCGATTGGTTTGAAATCATCAGTGAAAATTTTATGTTAGATGAGGGTAAGTCTTTAGAGTATTTACAAAAAA TTTTAGAAAGCTATCCCGTAGTTCAACATGGGGTATCCTTGGCAATTGGAAGTTCTGCTCCTCTTGATTACGCGTACTTA AAAAAACTCAAAGCACTCACTAAATTAACAAAAACTCCTTGGGTCTCTGATCACTTATGTTGGGGACACCAACCAGGCGC TCATTACCATGACTTACTTCCACTTCCTTATACACGAGAAGTCGTTGATTATGTGGCAGAAAGAGCTCGGATTGTTCAAG ATTATTTAGAAATTCCTTTTGCTTTAGAAAATCTTTCTTCTTATGTGGCATTTACACAAGATCAAATGCCAGAATGGGAA TTTTATGCTGCCATTGTAGAAAAAGCAAACATTTACATGATGCTAGATGTCAATAATATTTATGTTTCTAGTCGAAATCA TGGATTTGATCCCAAACTTTACTATCAAAATATTCCCCTAGAACGAGTCATTCAAATTCATTTAGCAGGTCACCAAGATT TTGGGGATTATGTCTTAGATACACACGATCATCCCGTCAGAGATGAAGTCTGGGAATTATATGCAGAAATCTATCCATTG ACTGGAGGAGTTTCTACTCTTCTTGAATGGGATGACAATCTTTTATCTTTTGAAGAAACTTGGAAAGAAGCTTTAAAAGC CAAACAATTTCAAAAAAATATTTCTTCTCCTTTACCCTCTTCTTTAGTCAACTCTGTTTGA
Upstream 100 bases:
>100_bases AGATGCATGTGCGTGCCAGTAGTGGTTGCGCACATTTATTTTTCTAAACACCTTTAAAAGCTGACAAGTCACGTTCAATG ACTTTTTAGATAGGCAAAAA
Downstream 100 bases:
>100_bases GGATAAATGAATAGAATTCGCAACTCAAGTTATAAACAAGTAAATATTCCAAAAGATCTTCAACTAATCCAGGAATGGTT TGCAAATGTTATTACTACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MAPRQIPNLGIGIGLRFPHLEDIFKFKPEIDWFEIISENFMLDEGKSLEYLQKILESYPVVQHGVSLAIGSSAPLDYAYL KKLKALTKLTKTPWVSDHLCWGHQPGAHYHDLLPLPYTREVVDYVAERARIVQDYLEIPFALENLSSYVAFTQDQMPEWE FYAAIVEKANIYMMLDVNNIYVSSRNHGFDPKLYYQNIPLERVIQIHLAGHQDFGDYVLDTHDHPVRDEVWELYAEIYPL TGGVSTLLEWDDNLLSFEETWKEALKAKQFQKNISSPLPSSLVNSV
Sequences:
>Translated_286_residues MAPRQIPNLGIGIGLRFPHLEDIFKFKPEIDWFEIISENFMLDEGKSLEYLQKILESYPVVQHGVSLAIGSSAPLDYAYL KKLKALTKLTKTPWVSDHLCWGHQPGAHYHDLLPLPYTREVVDYVAERARIVQDYLEIPFALENLSSYVAFTQDQMPEWE FYAAIVEKANIYMMLDVNNIYVSSRNHGFDPKLYYQNIPLERVIQIHLAGHQDFGDYVLDTHDHPVRDEVWELYAEIYPL TGGVSTLLEWDDNLLSFEETWKEALKAKQFQKNISSPLPSSLVNSV >Mature_285_residues APRQIPNLGIGIGLRFPHLEDIFKFKPEIDWFEIISENFMLDEGKSLEYLQKILESYPVVQHGVSLAIGSSAPLDYAYLK KLKALTKLTKTPWVSDHLCWGHQPGAHYHDLLPLPYTREVVDYVAERARIVQDYLEIPFALENLSSYVAFTQDQMPEWEF YAAIVEKANIYMMLDVNNIYVSSRNHGFDPKLYYQNIPLERVIQIHLAGHQDFGDYVLDTHDHPVRDEVWELYAEIYPLT GGVSTLLEWDDNLLSFEETWKEALKAKQFQKNISSPLPSSLVNSV
Specific function: Unknown
COG id: COG3220
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0276 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007801 - InterPro: IPR013022 [H]
Pfam domain/function: PF05114 DUF692 [H]
EC number: NA
Molecular weight: Translated: 33063; Mature: 32932
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPRQIPNLGIGIGLRFPHLEDIFKFKPEIDWFEIISENFMLDEGKSLEYLQKILESYPV CCCCCCCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH VQHGVSLAIGSSAPLDYAYLKKLKALTKLTKTPWVSDHLCWGHQPGAHYHDLLPLPYTRE HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHH VVDYVAERARIVQDYLEIPFALENLSSYVAFTQDQMPEWEFYAAIVEKANIYMMLDVNNI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECEE YVSSRNHGFDPKLYYQNIPLERVIQIHLAGHQDFGDYVLDTHDHPVRDEVWELYAEIYPL EEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCC TGGVSTLLEWDDNLLSFEETWKEALKAKQFQKNISSPLPSSLVNSV CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC >Mature Secondary Structure APRQIPNLGIGIGLRFPHLEDIFKFKPEIDWFEIISENFMLDEGKSLEYLQKILESYPV CCCCCCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH VQHGVSLAIGSSAPLDYAYLKKLKALTKLTKTPWVSDHLCWGHQPGAHYHDLLPLPYTRE HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHH VVDYVAERARIVQDYLEIPFALENLSSYVAFTQDQMPEWEFYAAIVEKANIYMMLDVNNI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECEE YVSSRNHGFDPKLYYQNIPLERVIQIHLAGHQDFGDYVLDTHDHPVRDEVWELYAEIYPL EEECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCC TGGVSTLLEWDDNLLSFEETWKEALKAKQFQKNISSPLPSSLVNSV CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA