| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447407
Identifier: 46447407
GI number: 46447407
Start: 2125717
End: 2126610
Strand: Direct
Name: 46447407
Synonym: pc1773
Alternate gene names: NA
Gene position: 2125717-2126610 (Clockwise)
Preceding gene: 46447403
Following gene: 46447409
Centisome position: 88.04
GC content: 35.35
Gene sequence:
>894_bases ATGGATTATTCTAATCACCATATCGGTCCAGTTAATGATGGAATCCCTATCATTGGAACTTATCCCTATGAAGGAGAATT AACGATGGGGGAACCACAACAACCTCCAGAACAACAAATTAACGGCCATGCTTATAAACAATGGGTAGAAAGTTACGAAG CTAAATATCAACCAGCATTAAACAACTTACAAAGTAAAATTACGTATGTTTCATTTCAAACTTTTCATGATGAGCTTACC CGAGCTTACCAACAATTTCATGGTAAAGTTAACGATTACATTGCTTTAGTCGAACCCGGAAAAAGCCAAAAATGGGTAAC AGAATTAGTGATGCAACAAGGGTTAAACGCAAAAGCCTATCTTTGTGTAGGGGAAGAAGGAGCTGCTAGGTTAGACTATT CTTTAAAGCAAATGGAAGAAAATAGAGACATACCAAACTACGTCATTGTCGATGATGGATCTTACTCTGGCAATCAAATG GCAAATAATATTACTCGTGCTAATGAGATTATTTTTAATAATACGGGCGTAAAGCCTACCTTTCATGTTATTATTCCTTA TATTACCAAAACTGCGCTCGATAAATTAGAAGAATTAAGAAAAAGTAATGTAAAAATTCAGATCTATCATGCTGTAATCA TGAAAACAATTTCAGAAGAAATTAAATCAAATGATCTAAACAAAATCAAAGATGTCTTTTGGAAAGGCATGAATCAAAAT GCGCAGGCACAACGGCCTACCACAGCGGCTCTTCATTGGTTTGCTCATAAAGTTCCCAATCAAATGTCATTCCCAGATGT TTTAGCAAAAGGAACTGTTACTCATCCTAAATCAAAAACAACAAGTGATCCTGTTCCTTTTATTCCTGAATTTACACCCC CTTATAAATCGTAA
Upstream 100 bases:
>100_bases AAAACTATTTTTAGTAGTAAAATAAAGTTAACAAGATGCGATAAAAAAAGATAATTTAACCTTCATTTTAATAAATAATA AAAAATAAAGGATAATTAAA
Downstream 100 bases:
>100_bases GAAAAAATATGTAAAAACCAACTTGACTTTGAAATTCGCCAAGTAGAATTTCAAAGTCAACTTGTCTAGTCTCAAGCTCA AGAAGTTAATTTTTTATTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MDYSNHHIGPVNDGIPIIGTYPYEGELTMGEPQQPPEQQINGHAYKQWVESYEAKYQPALNNLQSKITYVSFQTFHDELT RAYQQFHGKVNDYIALVEPGKSQKWVTELVMQQGLNAKAYLCVGEEGAARLDYSLKQMEENRDIPNYVIVDDGSYSGNQM ANNITRANEIIFNNTGVKPTFHVIIPYITKTALDKLEELRKSNVKIQIYHAVIMKTISEEIKSNDLNKIKDVFWKGMNQN AQAQRPTTAALHWFAHKVPNQMSFPDVLAKGTVTHPKSKTTSDPVPFIPEFTPPYKS
Sequences:
>Translated_297_residues MDYSNHHIGPVNDGIPIIGTYPYEGELTMGEPQQPPEQQINGHAYKQWVESYEAKYQPALNNLQSKITYVSFQTFHDELT RAYQQFHGKVNDYIALVEPGKSQKWVTELVMQQGLNAKAYLCVGEEGAARLDYSLKQMEENRDIPNYVIVDDGSYSGNQM ANNITRANEIIFNNTGVKPTFHVIIPYITKTALDKLEELRKSNVKIQIYHAVIMKTISEEIKSNDLNKIKDVFWKGMNQN AQAQRPTTAALHWFAHKVPNQMSFPDVLAKGTVTHPKSKTTSDPVPFIPEFTPPYKS >Mature_297_residues MDYSNHHIGPVNDGIPIIGTYPYEGELTMGEPQQPPEQQINGHAYKQWVESYEAKYQPALNNLQSKITYVSFQTFHDELT RAYQQFHGKVNDYIALVEPGKSQKWVTELVMQQGLNAKAYLCVGEEGAARLDYSLKQMEENRDIPNYVIVDDGSYSGNQM ANNITRANEIIFNNTGVKPTFHVIIPYITKTALDKLEELRKSNVKIQIYHAVIMKTISEEIKSNDLNKIKDVFWKGMNQN AQAQRPTTAALHWFAHKVPNQMSFPDVLAKGTVTHPKSKTTSDPVPFIPEFTPPYKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33780; Mature: 33780
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYSNHHIGPVNDGIPIIGTYPYEGELTMGEPQQPPEQQINGHAYKQWVESYEAKYQPAL CCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCHHH NNLQSKITYVSFQTFHDELTRAYQQFHGKVNDYIALVEPGKSQKWVTELVMQQGLNAKAY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCHHHHHHHHHHCCCCCEEE LCVGEEGAARLDYSLKQMEENRDIPNYVIVDDGSYSGNQMANNITRANEIIFNNTGVKPT EEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCEE FHVIIPYITKTALDKLEELRKSNVKIQIYHAVIMKTISEEIKSNDLNKIKDVFWKGMNQN EEEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC AQAQRPTTAALHWFAHKVPNQMSFPDVLAKGTVTHPKSKTTSDPVPFIPEFTPPYKS CCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDYSNHHIGPVNDGIPIIGTYPYEGELTMGEPQQPPEQQINGHAYKQWVESYEAKYQPAL CCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCHHH NNLQSKITYVSFQTFHDELTRAYQQFHGKVNDYIALVEPGKSQKWVTELVMQQGLNAKAY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCHHHHHHHHHHCCCCCEEE LCVGEEGAARLDYSLKQMEENRDIPNYVIVDDGSYSGNQMANNITRANEIIFNNTGVKPT EEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCEE FHVIIPYITKTALDKLEELRKSNVKIQIYHAVIMKTISEEIKSNDLNKIKDVFWKGMNQN EEEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC AQAQRPTTAALHWFAHKVPNQMSFPDVLAKGTVTHPKSKTTSDPVPFIPEFTPPYKS CCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA