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The map label for this gene is yagA [C]

Identifier: 46447285

GI number: 46447285

Start: 1982943

End: 1983281

Strand: Direct

Name: yagA [C]

Synonym: pc1651

Alternate gene names: 46447285

Gene position: 1982943-1983281 (Clockwise)

Preceding gene: 46447284

Following gene: 46447287

Centisome position: 82.13

GC content: 37.46

Gene sequence:

>339_bases
GTGATTGGGGGTTTGGATCGTTTGAGCTTGATAAAAAGAATGCCAGAAAGCATAAGAGTAGACAATGACCCTGAGTATAC
TTCAAAAATGGGCCAAAGAAAAAGGCTTGAACTGAATTGTATTCCACCTGGGAAGCCAATAAAGGATGGCAACATTGAAA
GTTTCAATGGAAAAATCAGACAAAAATGTTTAAATCAAAATTTATTTTTAGACTTACAGGAGGCACAAGAAATCATAGAA
GCTTGGAGGGTTGAATACAATAAAGAGCGGCCGCATAGCCTGCTTGAGTATTCGACCCAGCAGAATTCGCTAGCAAATAC
TTTTTTAAACAAGAAATGA

Upstream 100 bases:

>100_bases
GTTGGCTTCAGGCAAGAAAATCCGAATGCTGAATATTATAGATATTTTTTCAAGAGAATACCCAGCGATTTTAGAGGGAA
GCTCTATGCCAAGCTACTGA

Downstream 100 bases:

>100_bases
TAAAAATTAATAAAAGTATGAGTTTGTAATTGAATTACATTCTTGAGGGGAATCAATAGTACTGGGTGTCCCTGTCCACT
TTTTTTGCGCACTAGTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MIGGLDRLSLIKRMPESIRVDNDPEYTSKMGQRKRLELNCIPPGKPIKDGNIESFNGKIRQKCLNQNLFLDLQEAQEIIE
AWRVEYNKERPHSLLEYSTQQNSLANTFLNKK

Sequences:

>Translated_112_residues
MIGGLDRLSLIKRMPESIRVDNDPEYTSKMGQRKRLELNCIPPGKPIKDGNIESFNGKIRQKCLNQNLFLDLQEAQEIIE
AWRVEYNKERPHSLLEYSTQQNSLANTFLNKK
>Mature_112_residues
MIGGLDRLSLIKRMPESIRVDNDPEYTSKMGQRKRLELNCIPPGKPIKDGNIESFNGKIRQKCLNQNLFLDLQEAQEIIE
AWRVEYNKERPHSLLEYSTQQNSLANTFLNKK

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 13047; Mature: 13047

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGLDRLSLIKRMPESIRVDNDPEYTSKMGQRKRLELNCIPPGKPIKDGNIESFNGKIR
CCCCHHHHHHHHHCHHHCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHH
QKCLNQNLFLDLQEAQEIIEAWRVEYNKERPHSLLEYSTQQNSLANTFLNKK
HHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGGLDRLSLIKRMPESIRVDNDPEYTSKMGQRKRLELNCIPPGKPIKDGNIESFNGKIR
CCCCHHHHHHHHHCHHHCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHH
QKCLNQNLFLDLQEAQEIIEAWRVEYNKERPHSLLEYSTQQNSLANTFLNKK
HHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]