| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447250
Identifier: 46447250
GI number: 46447250
Start: 1932755
End: 1935196
Strand: Direct
Name: 46447250
Synonym: pc1616
Alternate gene names: NA
Gene position: 1932755-1935196 (Clockwise)
Preceding gene: 46447249
Following gene: 46447251
Centisome position: 80.05
GC content: 35.63
Gene sequence:
>2442_bases GTGATTCAACTAATTCGGGTGGTAATTTTGAATATTCAGAACATAAGATCTAATTCTAGTAATTTAATTGTCAATACAGA CACTCATTCTTACATTCGATCAAACGATCGTTTAAAATTTTCTGAACGAATTGTTTTATTGTGCAAAACAATTTTTCAGA GTTTTCTCAACTTATTCTTTAATTATCTCAAAAAAGAACAGCTTCAATCTCAATGGAGGGAAGTTTTTTGGGGACAAAAA GAATTCGTCATTTCTAATCTTGCTCCAACTCAATCAGAATCTGGGATCTTTCTATCAAGTCCGAGCCAAATTTCGGGTTT TGCCCTCCCTTTTATAACTGCGAATCGAAATCAAGAAACTATTGATTATCCTAAGAATGAAAGCAATTTGGTAATAAACT CTTTAGATACTTCAATAGACTCAAATACCTCAAACAGTCATTTCCCAAAAACAGTGGATCCCTTAATAATTCCCCCTTCC CAACTGGCACCTTCACCCCAAGGTGTTAAACTGAGCTTTCAAGGAGGAACTTCTTTAATCATTCCTTATTCTCAATTAGC TTTGTTAAAGAAAAAATCACCCTATTTTAACAGCCTTTGGTCAGGACATTTTCAAGAAACGCTTCAAGTTCCCCTTGCTA TAACAGAAAAAAAATTTACTAACTTACTACAGTGCTTAATGGATGCTAATTTTAAACTTTCGGTGGAAGACATTCCTTGT TCCATTGCATTAGCCGATTATTACCAATTAACAGAAGTGGTAGAAAACTTAGAAAAACAGCTGATTAAAATCTATCAATC AGAGGATGCTCTATTTAATTCGAACGAAGAAAGTCTCATAGAATTAAAAGAGCTATTAAATTTTGCGCGTCTGTATCAAT TAAATAATTTAATAAATTATTTAGAGTTCACAGTAGTGAGCGGTTTATTAAACAATACTTCTCATGTGAACGAATTTGAA AAAATTTTAAACCACTTCTCAAATGAAATAGAAGGACTCAATCTTTCAGGAAAAGATTTTTTTACAGAGGCTCATTTTTT AGCCTTAAAAAATTGTAAAAATTTAAAAGTGCTGTGTCTAAAAATATTCTACACTCCCATTGACACCGGATTAGCCCATT TGACGTCTTTAACGGCTTTACAACACTTAGATCTCAGTGAATGCTATCTACTTAAGGATACTGGGTTAGCCCATTTGTCA TCTTTAACCGCTTTACAGTATTTAGATTTAAGTGATTCTGGAAATTTCACGGATGCTGGGTTAGCCCATTTAACACCTTT AGTCTCCTTGCAACATTTAGATTTAAGTAAGAGTGAAAATCTCACTGGCGATGGATTAGCCCATTTGACACCTTTAGTCG CTTTGCGACACTTAGGTTTGAGTGATTGTAGAAATCTCACGGATGCTGGATTAGCACATTTGACACCTTTAGTCGCCTTG CGACACTTAGATTTAAGTGAGTGTAAAAATCTCACTGACGATGGACTAGTGCATTTATCTTCCTTAGTCGCTTTGCAATA TTTATCTCTAAAACTGTGTGAAAATCTCACCGATGCTGGATTAGCGCATTTGACGCCCTTGACGACTTTAGAGCATTTGG ATTTAGGTTTGGATTTAGGTTGTTGCCATAATCTCACTGACGATGGGTTAGCACATTTGTCGTCCTTAACAGCTTTAAAG CATTTAGATCTAAGTTGGCGTGAAAATCTCACGGATGCTGGATTAGCACATTTAACGCCCTTAACGGCTTTAAGGCATTT AGACTTAAGTTGGTGTGAAAATCTCACGGATGAGGGATTGGCCTATTTGACACCCCTAGTTGCTTTACAGTATTTGAGTT TAAAGGGCAGTGACATCACTGATGAAGGACTAGAACATTTGGCACACTTAAGTGCTTTACGGCATTTAAGTTTGAATGAC TGCCGTAGGATCAATGGCTATGGATTAGCGCACTTGACATCTTTAGTGAATTTAGAGCATCTAGACTTAAGCGGCTGCTA TCACCTTCCTAGTTTTCAATTAATTTATTTATCATCTTTAGTGAATTTACAGCATTTAAACCTAAGTGAGTGTTTTGGTC TTTGTCACGATGGATTAGAAGATTTGACTCCTTTAATGAATTTGCAGTATTTAGATCTAAGTGGGTGTATAAATCTGACG GACCAGGGACTGGCATATTTGACCTCTTTAGTAGGTCTAGATTTACAACATTTAGATCTAAGTGGGTGTAAAAAAATCAC TGACACTGGATTGGCACATTTGACCTCCTTAGTGACTTTACAGCATTTGAATTTGAGTGAATGTGTAAATCTCACTGATA CTGGATTGGCACATTTAGTTTCCCTAGTAAATTTACAATATTTAGAGCTACGAGAATGTAAAAACATTACAGACGCTGGG TTGGCTCATTACATACAAAATCAACAAATAATCCTTCGTTAA
Upstream 100 bases:
>100_bases TTTTTCAATAACAAATTTAAATATAGATCTCTTTTGTTTAAAATTGCGATGCTATTTATTCTTATAGTATTTTATTAATA AATAATGTAAAATTTAAAAA
Downstream 100 bases:
>100_bases AAGAAGGTAAAAAAAAGTAGTGTCAATTGAGCGAACGTTCTGCGTATGAGAATATTATGTGGATGTTTGAACACTCAAAA TTATAGCTCAGCACTATAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MIQLIRVVILNIQNIRSNSSNLIVNTDTHSYIRSNDRLKFSERIVLLCKTIFQSFLNLFFNYLKKEQLQSQWREVFWGQK EFVISNLAPTQSESGIFLSSPSQISGFALPFITANRNQETIDYPKNESNLVINSLDTSIDSNTSNSHFPKTVDPLIIPPS QLAPSPQGVKLSFQGGTSLIIPYSQLALLKKKSPYFNSLWSGHFQETLQVPLAITEKKFTNLLQCLMDANFKLSVEDIPC SIALADYYQLTEVVENLEKQLIKIYQSEDALFNSNEESLIELKELLNFARLYQLNNLINYLEFTVVSGLLNNTSHVNEFE KILNHFSNEIEGLNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLS SLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVAL RHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALK HLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLND CRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLT DQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNITDAG LAHYIQNQQIILR
Sequences:
>Translated_813_residues MIQLIRVVILNIQNIRSNSSNLIVNTDTHSYIRSNDRLKFSERIVLLCKTIFQSFLNLFFNYLKKEQLQSQWREVFWGQK EFVISNLAPTQSESGIFLSSPSQISGFALPFITANRNQETIDYPKNESNLVINSLDTSIDSNTSNSHFPKTVDPLIIPPS QLAPSPQGVKLSFQGGTSLIIPYSQLALLKKKSPYFNSLWSGHFQETLQVPLAITEKKFTNLLQCLMDANFKLSVEDIPC SIALADYYQLTEVVENLEKQLIKIYQSEDALFNSNEESLIELKELLNFARLYQLNNLINYLEFTVVSGLLNNTSHVNEFE KILNHFSNEIEGLNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLS SLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVAL RHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALK HLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLND CRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLT DQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNITDAG LAHYIQNQQIILR >Mature_813_residues MIQLIRVVILNIQNIRSNSSNLIVNTDTHSYIRSNDRLKFSERIVLLCKTIFQSFLNLFFNYLKKEQLQSQWREVFWGQK EFVISNLAPTQSESGIFLSSPSQISGFALPFITANRNQETIDYPKNESNLVINSLDTSIDSNTSNSHFPKTVDPLIIPPS QLAPSPQGVKLSFQGGTSLIIPYSQLALLKKKSPYFNSLWSGHFQETLQVPLAITEKKFTNLLQCLMDANFKLSVEDIPC SIALADYYQLTEVVENLEKQLIKIYQSEDALFNSNEESLIELKELLNFARLYQLNNLINYLEFTVVSGLLNNTSHVNEFE KILNHFSNEIEGLNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLS SLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVAL RHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALK HLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLND CRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLT DQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNITDAG LAHYIQNQQIILR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=313, Percent_Identity=34.185303514377, Blast_Score=126, Evalue=7e-29, Organism=Homo sapiens, GI161333852, Length=517, Percent_Identity=27.0793036750484, Blast_Score=124, Evalue=5e-28, Organism=Homo sapiens, GI284447308, Length=312, Percent_Identity=33.0128205128205, Blast_Score=104, Evalue=4e-22, Organism=Homo sapiens, GI6912466, Length=314, Percent_Identity=28.9808917197452, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI161333854, Length=478, Percent_Identity=25.3138075313808, Blast_Score=95, Evalue=3e-19, Organism=Homo sapiens, GI27734755, Length=313, Percent_Identity=32.2683706070287, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI289666746, Length=246, Percent_Identity=32.1138211382114, Blast_Score=84, Evalue=8e-16, Organism=Homo sapiens, GI296531375, Length=238, Percent_Identity=33.1932773109244, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI284447314, Length=238, Percent_Identity=32.7731092436975, Blast_Score=71, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25151694, Length=311, Percent_Identity=29.2604501607717, Blast_Score=88, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25151696, Length=311, Percent_Identity=29.2604501607717, Blast_Score=87, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322549, Length=201, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI17647819, Length=359, Percent_Identity=31.4763231197772, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI24662818, Length=251, Percent_Identity=35.8565737051793, Blast_Score=97, Evalue=5e-20, Organism=Drosophila melanogaster, GI21357913, Length=190, Percent_Identity=34.7368421052632, Blast_Score=81, Evalue=4e-15, Organism=Drosophila melanogaster, GI19921840, Length=359, Percent_Identity=27.5766016713092, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI161076545, Length=312, Percent_Identity=32.0512820512821, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24652783, Length=312, Percent_Identity=32.0512820512821, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI161076549, Length=312, Percent_Identity=32.0512820512821, Blast_Score=76, Evalue=9e-14, Organism=Drosophila melanogaster, GI161076547, Length=312, Percent_Identity=32.0512820512821, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90513; Mature: 90513
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQLIRVVILNIQNIRSNSSNLIVNTDTHSYIRSNDRLKFSERIVLLCKTIFQSFLNLFF CHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH NYLKKEQLQSQWREVFWGQKEFVISNLAPTQSESGIFLSSPSQISGFALPFITANRNQET HHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCC IDYPKNESNLVINSLDTSIDSNTSNSHFPKTVDPLIIPPSQLAPSPQGVKLSFQGGTSLI CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCHHCCCCCCCEEEEECCCCEEE IPYSQLALLKKKSPYFNSLWSGHFQETLQVPLAITEKKFTNLLQCLMDANFKLSVEDIPC ECHHHHHHHHCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC SIALADYYQLTEVVENLEKQLIKIYQSEDALFNSNEESLIELKELLNFARLYQLNNLINY EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LEFTVVSGLLNNTSHVNEFEKILNHFSNEIEGLNLSGKDFFTEAHFLALKNCKNLKVLCL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEH KIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAG HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCC LAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVAL HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHH RHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLG HCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHCHHHHHHHHCCCCCHH CCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGL HHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCHH AYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEH HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHC LDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLT CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCC DQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLV HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH SLVNLQYLELRECKNITDAGLAHYIQNQQIILR HHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC >Mature Secondary Structure MIQLIRVVILNIQNIRSNSSNLIVNTDTHSYIRSNDRLKFSERIVLLCKTIFQSFLNLFF CHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH NYLKKEQLQSQWREVFWGQKEFVISNLAPTQSESGIFLSSPSQISGFALPFITANRNQET HHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCC IDYPKNESNLVINSLDTSIDSNTSNSHFPKTVDPLIIPPSQLAPSPQGVKLSFQGGTSLI CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCHHCCCCCCCEEEEECCCCEEE IPYSQLALLKKKSPYFNSLWSGHFQETLQVPLAITEKKFTNLLQCLMDANFKLSVEDIPC ECHHHHHHHHCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC SIALADYYQLTEVVENLEKQLIKIYQSEDALFNSNEESLIELKELLNFARLYQLNNLINY EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LEFTVVSGLLNNTSHVNEFEKILNHFSNEIEGLNLSGKDFFTEAHFLALKNCKNLKVLCL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEH KIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAG HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCC LAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVAL HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHH RHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLG HCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHCHHHHHHHHCCCCCHH CCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGL HHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCHH AYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEH HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHC LDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLT CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCC DQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLV HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH SLVNLQYLELRECKNITDAGLAHYIQNQQIILR HHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA