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The map label for this gene is yabJ [C]

Identifier: 46447168

GI number: 46447168

Start: 1837384

End: 1837773

Strand: Direct

Name: yabJ [C]

Synonym: pc1534

Alternate gene names: 46447168

Gene position: 1837384-1837773 (Clockwise)

Preceding gene: 46447166

Following gene: 46447169

Centisome position: 76.1

GC content: 34.62

Gene sequence:

>390_bases
ATGGTTAATTTAAAAAAAATTGAGACAATGCAGGCTCCAAAAGCTATTGGTCCTTATTCCCAAGCTGTGTTAGCAGATAA
ACATTTGTATGTTTCTGGACAGCTAGGCATTGATCCAACGACAGGGAAATTAGAATTAAATGATATTTCCCTCCAAATCA
ATCGGGTTTTAGATAACCTTGAAGCAATTCTTAAAGAAGCTGGATGTACATTTCAAAATATCGTTCGTTGCGATGTTTTT
CTCAAAGATTTAAATGATTTTGCAATCGTTAACGAAGCTTATAGTAAACGATTTTCTCATTCTATTCCCCCAGCAAGACA
AACTGTTCAAGTGGCAAAACTTCCTCTAGACGCATTAGTAGAAATCTCTTGCATTGCTATAATTTCTTAA

Upstream 100 bases:

>100_bases
TTTGAGAGTTTGACCTTTTAAAACAAGTCTATTATTGGCAAAAACTTCCTAAGTGCATAAAATGCCAAACTTGATATTTT
TTATGAATGAGGAGTTTTTT

Downstream 100 bases:

>100_bases
TATTAATGAATTTTTAAAGGTATTCAAATGGAAAAAGGTTCTCTTCAAATACACAGTGAAAATATTTTACCAATCATCAA
AAAATGGCTATATTCTGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MVNLKKIETMQAPKAIGPYSQAVLADKHLYVSGQLGIDPTTGKLELNDISLQINRVLDNLEAILKEAGCTFQNIVRCDVF
LKDLNDFAIVNEAYSKRFSHSIPPARQTVQVAKLPLDALVEISCIAIIS

Sequences:

>Translated_129_residues
MVNLKKIETMQAPKAIGPYSQAVLADKHLYVSGQLGIDPTTGKLELNDISLQINRVLDNLEAILKEAGCTFQNIVRCDVF
LKDLNDFAIVNEAYSKRFSHSIPPARQTVQVAKLPLDALVEISCIAIIS
>Mature_129_residues
MVNLKKIETMQAPKAIGPYSQAVLADKHLYVSGQLGIDPTTGKLELNDISLQINRVLDNLEAILKEAGCTFQNIVRCDVF
LKDLNDFAIVNEAYSKRFSHSIPPARQTVQVAKLPLDALVEISCIAIIS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=47.9338842975207, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=44, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=42.5196850393701, Blast_Score=97, Evalue=4e-22,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=47.9338842975207, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=47.9338842975207, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=47.9338842975207, Blast_Score=109, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=127, Percent_Identity=38.5826771653543, Blast_Score=88, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=51.219512195122, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14195; Mature: 14195

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLKKIETMQAPKAIGPYSQAVLADKHLYVSGQLGIDPTTGKLELNDISLQINRVLDNL
CCCHHHHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EAILKEAGCTFQNIVRCDVFLKDLNDFAIVNEAYSKRFSHSIPPARQTVQVAKLPLDALV
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
EISCIAIIS
HHHEEEEEC
>Mature Secondary Structure
MVNLKKIETMQAPKAIGPYSQAVLADKHLYVSGQLGIDPTTGKLELNDISLQINRVLDNL
CCCHHHHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EAILKEAGCTFQNIVRCDVFLKDLNDFAIVNEAYSKRFSHSIPPARQTVQVAKLPLDALV
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
EISCIAIIS
HHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]