| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447150
Identifier: 46447150
GI number: 46447150
Start: 1814064
End: 1816448
Strand: Direct
Name: 46447150
Synonym: pc1516
Alternate gene names: NA
Gene position: 1814064-1816448 (Clockwise)
Preceding gene: 46447149
Following gene: 46447151
Centisome position: 75.13
GC content: 36.48
Gene sequence:
>2385_bases ATGATAACGTTAAACTCTTCGTATACTGCAATTGCAGATATTGTTCGAAATGACAATATTGGTGGAATTTTGAAGAAAGC GGAGGCAACAGTAGTCGGGGGAAAGGTTCAATTGTACTTGGGAGATAGTATGATCAGTTATCTCCCTGCTATTGACGCTA TTTTCCAACAAGCTGGAGTCAATTCGGAACCAGCGAAAAAGCTTCTAATCGTATTTAGGAAGTATAAATTAGGAGTCATT AATGCTTCAAAGTTGCAGAGAAAGATCGAGATTCTTGCTATCCCTTATACAAAAGAGATTAGTGAAATTATTCAGAGTAG AACGAGTCATCCTAAGCCTTTCTCAGAAAGGTTGGATGAAATCTTAGCCAGTAATGATTTTCAAAACACCTATGGCCTGC AGCTTACTGCTTCTCAGATCCACTCCAAAATTGCCAAAATTTGCGCTAAATATAAAACTATTTCTTTGTCTGCGCTTAGG GCACAGAAGCTGGGAAATATAGGGGAAAAACAAGAGGATATCAACGCCAAAGTAGATGAGCTTTTTGAAGCAGGGTTGGC CGCGAGTGCAGGAGCAAATGGACAAAACGTTGTTGTTTTTGTAGGAAATACAGGTGTAGGAAAAAGCACAACAATCAATT TTTTATTGAAGCGAGAATTAAAATCTATACCAAAAGAAGTTTTAGGTATTGAAAGCGTGATTGAAAATGTGATTATTGCT AAAGATCCTGCTACCTCTATCGGTCATAAGCGCATTTCAAAGACGAGTTATCCTCTGGTAGTGCAAGATCCAGACAATCA ATTGGCTTATTGTGATTGCCCAGGTTTTCGTGATACACGCGGAAAATCGGTAGAAATTTATAATGCGTTATCCATTATTG GTGTCCTCGATAAGGCTAAATCCGTTCGAGGTTTTTTGTTTTTTATCGATTGTTTTGCTTTGAAAGCTTCGAGAGGACAA GCAATCATTGACGACATGCGATTCCTTTTTCTCCTCCTACAAGATTTTAAGATCCACCAAAGAGCAGTACTATTTGTGAT TACAAAAACAATGCGAGCCGATAAGTTACATGATATCAAAAAAGTATTACAGGATAGTGTAGAAGAGATCTTGCAAGATG GAAATCAATCAATTGAGTTTAGGATTTTTTGCGGCGAAATTGCTGAAGCTAATTTTTTAGATAATGCAGGATTAGGTCAA AGAGTGTTTATCTGCGATCCATGTGGACCAAATGCAAAAGGAAATCGCGAAGAAATACTAAGAACTATCAATGCATTTTC CTACGACACAAATATCCATAAAAAATTTGGTTATCCTATTTCAGAAAAAGTTGAATCTAAATTAGATATGAGCCGGAATT CGATCATCTTTCAAGTACAGAAAACGTTGACAGTTTTAAAAAATAAACTAGGGCTGTACTGGGACGAACAAACAGAAAAA ATAAAAACTGAAATTGATAAGGTTTTAGTTGAAAAGACTAGAGCCTATTTGGATGAAATCAAACAATGGCAAAAGGATTT GAAACAGGAATTGTCTCATTTTGCTTCTGGAAATTACGTAAAAGTTTCTAAAGAACTGACCGATACCTTAACTCAAAGCC TTGTTTATTGGGATAAGTTGAATCAAATTAGTACACAGAAAACTAACATGGAAAATCTGGACGATCATTTTGAAGGTATT GTCAAAGAACTCCAGTCCATTCAAAGTAATATTGAAATTCTTTGGCACAAAAGGATGCATGAAGTAATTAAAAAAACTTT TGAGCAATCGCTTCAAACTTATCAAGTTCAAAACAAATTAGATGACATGCGTAAATCCTTACCACCCAAAAAATTAGCTG ATTTGACTGTAAAGGAGCTACGCGACCTTTTGCAAACCCTTGCTGATGCTGCTAAGGTTGCTCTCGAGTATCCTAATTTT ATTGAAGCAATCCTCATTAAGGATCCAAACAAGTGCAAGGATTTAATTGAAATCATTCGGGTGAATCTTATGGAACCTAT TCATGTGGTAAGTAATCAACAGGTGCTCAACATTACAGCCAATGCTCAAGCTGTAACTTTGTCTGAGATTTTAAAAAACA CACATGATTTACTAAATTCTACCCGAGAAATTTGGATTACTCAAATTGCAACACTTTATTTTAATAGTGAGCTGACCGCG GATCATTTTAAAGGAAAAGTGATTTATATTGCTGCTGACCAGATTGAAGTGGTTCAAGATAGCCTTATTGATTTAGCTGT TACATGGCGTCGTGGAGGCGTCATTACTTTAAAAGGACATTTGAAAGGGGAAGAAAAATTTGAAAACGCGCAATTCAAAT TGGTTCCAAAAGATCAAGTGAGCGATACTGTCCGCCTCATCAAATGCCAGTGGCCTCTTTCCTAA
Upstream 100 bases:
>100_bases ATTAACAGACATTAACAGACATTTATTAAAAATTAAGTTGTAAATTTTTTTTAAATAATTTTATATAGGATTTAAAATTT TATAAATTTCAGAGGTAATT
Downstream 100 bases:
>100_bases AAAAATAAATAAAAATGAGGTAAAAGTATGCAAATTTCATCCATTACGTTTGGAGATCATTTAGATCAGGTTCTTGACAA AGCCCAAAAACTCGCTACAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MITLNSSYTAIADIVRNDNIGGILKKAEATVVGGKVQLYLGDSMISYLPAIDAIFQQAGVNSEPAKKLLIVFRKYKLGVI NASKLQRKIEILAIPYTKEISEIIQSRTSHPKPFSERLDEILASNDFQNTYGLQLTASQIHSKIAKICAKYKTISLSALR AQKLGNIGEKQEDINAKVDELFEAGLAASAGANGQNVVVFVGNTGVGKSTTINFLLKRELKSIPKEVLGIESVIENVIIA KDPATSIGHKRISKTSYPLVVQDPDNQLAYCDCPGFRDTRGKSVEIYNALSIIGVLDKAKSVRGFLFFIDCFALKASRGQ AIIDDMRFLFLLLQDFKIHQRAVLFVITKTMRADKLHDIKKVLQDSVEEILQDGNQSIEFRIFCGEIAEANFLDNAGLGQ RVFICDPCGPNAKGNREEILRTINAFSYDTNIHKKFGYPISEKVESKLDMSRNSIIFQVQKTLTVLKNKLGLYWDEQTEK IKTEIDKVLVEKTRAYLDEIKQWQKDLKQELSHFASGNYVKVSKELTDTLTQSLVYWDKLNQISTQKTNMENLDDHFEGI VKELQSIQSNIEILWHKRMHEVIKKTFEQSLQTYQVQNKLDDMRKSLPPKKLADLTVKELRDLLQTLADAAKVALEYPNF IEAILIKDPNKCKDLIEIIRVNLMEPIHVVSNQQVLNITANAQAVTLSEILKNTHDLLNSTREIWITQIATLYFNSELTA DHFKGKVIYIAADQIEVVQDSLIDLAVTWRRGGVITLKGHLKGEEKFENAQFKLVPKDQVSDTVRLIKCQWPLS
Sequences:
>Translated_794_residues MITLNSSYTAIADIVRNDNIGGILKKAEATVVGGKVQLYLGDSMISYLPAIDAIFQQAGVNSEPAKKLLIVFRKYKLGVI NASKLQRKIEILAIPYTKEISEIIQSRTSHPKPFSERLDEILASNDFQNTYGLQLTASQIHSKIAKICAKYKTISLSALR AQKLGNIGEKQEDINAKVDELFEAGLAASAGANGQNVVVFVGNTGVGKSTTINFLLKRELKSIPKEVLGIESVIENVIIA KDPATSIGHKRISKTSYPLVVQDPDNQLAYCDCPGFRDTRGKSVEIYNALSIIGVLDKAKSVRGFLFFIDCFALKASRGQ AIIDDMRFLFLLLQDFKIHQRAVLFVITKTMRADKLHDIKKVLQDSVEEILQDGNQSIEFRIFCGEIAEANFLDNAGLGQ RVFICDPCGPNAKGNREEILRTINAFSYDTNIHKKFGYPISEKVESKLDMSRNSIIFQVQKTLTVLKNKLGLYWDEQTEK IKTEIDKVLVEKTRAYLDEIKQWQKDLKQELSHFASGNYVKVSKELTDTLTQSLVYWDKLNQISTQKTNMENLDDHFEGI VKELQSIQSNIEILWHKRMHEVIKKTFEQSLQTYQVQNKLDDMRKSLPPKKLADLTVKELRDLLQTLADAAKVALEYPNF IEAILIKDPNKCKDLIEIIRVNLMEPIHVVSNQQVLNITANAQAVTLSEILKNTHDLLNSTREIWITQIATLYFNSELTA DHFKGKVIYIAADQIEVVQDSLIDLAVTWRRGGVITLKGHLKGEEKFENAQFKLVPKDQVSDTVRLIKCQWPLS >Mature_794_residues MITLNSSYTAIADIVRNDNIGGILKKAEATVVGGKVQLYLGDSMISYLPAIDAIFQQAGVNSEPAKKLLIVFRKYKLGVI NASKLQRKIEILAIPYTKEISEIIQSRTSHPKPFSERLDEILASNDFQNTYGLQLTASQIHSKIAKICAKYKTISLSALR AQKLGNIGEKQEDINAKVDELFEAGLAASAGANGQNVVVFVGNTGVGKSTTINFLLKRELKSIPKEVLGIESVIENVIIA KDPATSIGHKRISKTSYPLVVQDPDNQLAYCDCPGFRDTRGKSVEIYNALSIIGVLDKAKSVRGFLFFIDCFALKASRGQ AIIDDMRFLFLLLQDFKIHQRAVLFVITKTMRADKLHDIKKVLQDSVEEILQDGNQSIEFRIFCGEIAEANFLDNAGLGQ RVFICDPCGPNAKGNREEILRTINAFSYDTNIHKKFGYPISEKVESKLDMSRNSIIFQVQKTLTVLKNKLGLYWDEQTEK IKTEIDKVLVEKTRAYLDEIKQWQKDLKQELSHFASGNYVKVSKELTDTLTQSLVYWDKLNQISTQKTNMENLDDHFEGI VKELQSIQSNIEILWHKRMHEVIKKTFEQSLQTYQVQNKLDDMRKSLPPKKLADLTVKELRDLLQTLADAAKVALEYPNF IEAILIKDPNKCKDLIEIIRVNLMEPIHVVSNQQVLNITANAQAVTLSEILKNTHDLLNSTREIWITQIATLYFNSELTA DHFKGKVIYIAADQIEVVQDSLIDLAVTWRRGGVITLKGHLKGEEKFENAQFKLVPKDQVSDTVRLIKCQWPLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89580; Mature: 89580
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITLNSSYTAIADIVRNDNIGGILKKAEATVVGGKVQLYLGDSMISYLPAIDAIFQQAGV CEEECCCHHHHHHHHHCCCCCHHHHHCCEEEECCEEEEEECCHHHHHHHHHHHHHHHCCC NSEPAKKLLIVFRKYKLGVINASKLQRKIEILAIPYTKEISEIIQSRTSHPKPFSERLDE CCCHHHHHHHHHHHHHCCCCCHHHHHCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHH ILASNDFQNTYGLQLTASQIHSKIAKICAKYKTISLSALRAQKLGNIGEKQEDINAKVDE HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHH LFEAGLAASAGANGQNVVVFVGNTGVGKSTTINFLLKRELKSIPKEVLGIESVIENVIIA HHHHCCHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC KDPATSIGHKRISKTSYPLVVQDPDNQLAYCDCPGFRDTRGKSVEIYNALSIIGVLDKAK CCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH SVRGFLFFIDCFALKASRGQAIIDDMRFLFLLLQDFKIHQRAVLFVITKTMRADKLHDIK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHH KVLQDSVEEILQDGNQSIEFRIFCGEIAEANFLDNAGLGQRVFICDPCGPNAKGNREEIL HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH RTINAFSYDTNIHKKFGYPISEKVESKLDMSRNSIIFQVQKTLTVLKNKLGLYWDEQTEK HHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCEECHHHHH IKTEIDKVLVEKTRAYLDEIKQWQKDLKQELSHFASGNYVKVSKELTDTLTQSLVYWDKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH NQISTQKTNMENLDDHFEGIVKELQSIQSNIEILWHKRMHEVIKKTFEQSLQTYQVQNKL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDMRKSLPPKKLADLTVKELRDLLQTLADAAKVALEYPNFIEAILIKDPNKCKDLIEIIR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH VNLMEPIHVVSNQQVLNITANAQAVTLSEILKNTHDLLNSTREIWITQIATLYFNSELTA HHHCCHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH DHFKGKVIYIAADQIEVVQDSLIDLAVTWRRGGVITLKGHLKGEEKFENAQFKLVPKDQV HHHCCEEEEEECCHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHCCCEEEECCHHHH SDTVRLIKCQWPLS CCCEEEEEECCCCC >Mature Secondary Structure MITLNSSYTAIADIVRNDNIGGILKKAEATVVGGKVQLYLGDSMISYLPAIDAIFQQAGV CEEECCCHHHHHHHHHCCCCCHHHHHCCEEEECCEEEEEECCHHHHHHHHHHHHHHHCCC NSEPAKKLLIVFRKYKLGVINASKLQRKIEILAIPYTKEISEIIQSRTSHPKPFSERLDE CCCHHHHHHHHHHHHHCCCCCHHHHHCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHH ILASNDFQNTYGLQLTASQIHSKIAKICAKYKTISLSALRAQKLGNIGEKQEDINAKVDE HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHH LFEAGLAASAGANGQNVVVFVGNTGVGKSTTINFLLKRELKSIPKEVLGIESVIENVIIA HHHHCCHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC KDPATSIGHKRISKTSYPLVVQDPDNQLAYCDCPGFRDTRGKSVEIYNALSIIGVLDKAK CCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH SVRGFLFFIDCFALKASRGQAIIDDMRFLFLLLQDFKIHQRAVLFVITKTMRADKLHDIK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHH KVLQDSVEEILQDGNQSIEFRIFCGEIAEANFLDNAGLGQRVFICDPCGPNAKGNREEIL HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH RTINAFSYDTNIHKKFGYPISEKVESKLDMSRNSIIFQVQKTLTVLKNKLGLYWDEQTEK HHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCEECHHHHH IKTEIDKVLVEKTRAYLDEIKQWQKDLKQELSHFASGNYVKVSKELTDTLTQSLVYWDKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH NQISTQKTNMENLDDHFEGIVKELQSIQSNIEILWHKRMHEVIKKTFEQSLQTYQVQNKL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDMRKSLPPKKLADLTVKELRDLLQTLADAAKVALEYPNFIEAILIKDPNKCKDLIEIIR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH VNLMEPIHVVSNQQVLNITANAQAVTLSEILKNTHDLLNSTREIWITQIATLYFNSELTA HHHCCHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH DHFKGKVIYIAADQIEVVQDSLIDLAVTWRRGGVITLKGHLKGEEKFENAQFKLVPKDQV HHHCCEEEEEECCHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHCCCEEEECCHHHH SDTVRLIKCQWPLS CCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA