| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447023
Identifier: 46447023
GI number: 46447023
Start: 1666578
End: 1667660
Strand: Direct
Name: 46447023
Synonym: pc1389
Alternate gene names: NA
Gene position: 1666578-1667660 (Clockwise)
Preceding gene: 46447022
Following gene: 46447024
Centisome position: 69.02
GC content: 36.66
Gene sequence:
>1083_bases ATGGCAGAAATTGATAGTAATCTTAATAGAAGTCCTTTTGTTATGGAAAATCTTGGTATCGACCCAAGCAATCTAACAAC TCAAGATACTAATATCCAAAAAGATAAGGGTACACTGGATACTACAGAAAGAAGTGATTTTAACATAAGTCAGAATTTAC GCACAACAGGCGATCCTTCAGTCCCTGTGTTGACAATGACTTTTAATACTAGTGTGGATGGAAATTTAAAATCTAATCCA TTTTTTAATCCCTCTTTTTTGGCTAGTTTTCAATCCATCATGGATGAATTATTGAATCTCCAGCGCGACACCCATTATCT GGAAGCTCAAGTTGAGCTTAAACAACGCGAATTGATTATTACCATTAGCACAACACAATCCGAATTGACCAAAGCGCTTT ATGATTCTAGAGCCGAAGAAAAAATGATTGAAGCGATTACTTCATTCGTGCAAGCGGGAATTGCAGGCCTTTCACTAGCT CAAACATGGGCAAACACGGGAATTGCGAGAGGAAATGCGCAAAAAACAGTCGATAACAATATTAGTCATGAACGAAGCTT AATGAAATCCGCAGAGGACAAAAAAGCAGCACTTGCTACTGAAAAGGCCGGCATTGAAAATAGGCCTTTAGTTGGAACAG ATCCAAATAATATGACCCCTCGTCCCTATACTAATGCAGAAAAAACTCGATTAAAAGAAATTGAAAAAGAAAATGCAGCA TTAGACAAGAAAATTACCAAACACCAAGAAAATATTCAAGAATTTGAAAAACCTGGTTACTTTAGGCAAGTTCTTGAAAG TGAAAGACAAATCTTGAACACGCAAACTCAATTTAAAAATGAAATTTTGAAAAACGTTGTGAATGGGATTAGTCAATCCC TGCAAGCCGGCCTTATTAGCGAACAAGGAGCTATCGACTCCTTAAAAACTATGAATGACGGCTATTTAGATGTGCTGCGA AAATATGCTGATTCAACAGCTAAATCAAGAGATGAAGCAAAAGCTGATTTTGACAAAACCCTAGATTTTGTGAATAAAAT TGTAGATTCAGTATTTAAGGCTCACTCTTTAGGCCCTGCTTAA
Upstream 100 bases:
>100_bases AATGAGAGTTTAAAAAATATTTTTTATCAATCAGATTTAACGATGACAAGCATGACACAATCGGCATAAATAAGAGTTGT CGTTTATAAAGGAGATAATT
Downstream 100 bases:
>100_bases AAATTGCCCTGTATTTAAACAAGTTAGTTAAGCTAAACTTTTTAAATACAGGGTTTTTCGCGCAAATCAAATTTGGGCTT AACAATATATTTATTTATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MAEIDSNLNRSPFVMENLGIDPSNLTTQDTNIQKDKGTLDTTERSDFNISQNLRTTGDPSVPVLTMTFNTSVDGNLKSNP FFNPSFLASFQSIMDELLNLQRDTHYLEAQVELKQRELIITISTTQSELTKALYDSRAEEKMIEAITSFVQAGIAGLSLA QTWANTGIARGNAQKTVDNNISHERSLMKSAEDKKAALATEKAGIENRPLVGTDPNNMTPRPYTNAEKTRLKEIEKENAA LDKKITKHQENIQEFEKPGYFRQVLESERQILNTQTQFKNEILKNVVNGISQSLQAGLISEQGAIDSLKTMNDGYLDVLR KYADSTAKSRDEAKADFDKTLDFVNKIVDSVFKAHSLGPA
Sequences:
>Translated_360_residues MAEIDSNLNRSPFVMENLGIDPSNLTTQDTNIQKDKGTLDTTERSDFNISQNLRTTGDPSVPVLTMTFNTSVDGNLKSNP FFNPSFLASFQSIMDELLNLQRDTHYLEAQVELKQRELIITISTTQSELTKALYDSRAEEKMIEAITSFVQAGIAGLSLA QTWANTGIARGNAQKTVDNNISHERSLMKSAEDKKAALATEKAGIENRPLVGTDPNNMTPRPYTNAEKTRLKEIEKENAA LDKKITKHQENIQEFEKPGYFRQVLESERQILNTQTQFKNEILKNVVNGISQSLQAGLISEQGAIDSLKTMNDGYLDVLR KYADSTAKSRDEAKADFDKTLDFVNKIVDSVFKAHSLGPA >Mature_359_residues AEIDSNLNRSPFVMENLGIDPSNLTTQDTNIQKDKGTLDTTERSDFNISQNLRTTGDPSVPVLTMTFNTSVDGNLKSNPF FNPSFLASFQSIMDELLNLQRDTHYLEAQVELKQRELIITISTTQSELTKALYDSRAEEKMIEAITSFVQAGIAGLSLAQ TWANTGIARGNAQKTVDNNISHERSLMKSAEDKKAALATEKAGIENRPLVGTDPNNMTPRPYTNAEKTRLKEIEKENAAL DKKITKHQENIQEFEKPGYFRQVLESERQILNTQTQFKNEILKNVVNGISQSLQAGLISEQGAIDSLKTMNDGYLDVLRK YADSTAKSRDEAKADFDKTLDFVNKIVDSVFKAHSLGPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40116; Mature: 39985
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEIDSNLNRSPFVMENLGIDPSNLTTQDTNIQKDKGTLDTTERSDFNISQNLRTTGDPS CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPVLTMTFNTSVDGNLKSNPFFNPSFLASFQSIMDELLNLQRDTHYLEAQVELKQRELII CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEE TISTTQSELTKALYDSRAEEKMIEAITSFVQAGIAGLSLAQTWANTGIARGNAQKTVDNN EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC ISHERSLMKSAEDKKAALATEKAGIENRPLVGTDPNNMTPRPYTNAEKTRLKEIEKENAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LDKKITKHQENIQEFEKPGYFRQVLESERQILNTQTQFKNEILKNVVNGISQSLQAGLIS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGAIDSLKTMNDGYLDVLRKYADSTAKSRDEAKADFDKTLDFVNKIVDSVFKAHSLGPA CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AEIDSNLNRSPFVMENLGIDPSNLTTQDTNIQKDKGTLDTTERSDFNISQNLRTTGDPS CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPVLTMTFNTSVDGNLKSNPFFNPSFLASFQSIMDELLNLQRDTHYLEAQVELKQRELII CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEE TISTTQSELTKALYDSRAEEKMIEAITSFVQAGIAGLSLAQTWANTGIARGNAQKTVDNN EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC ISHERSLMKSAEDKKAALATEKAGIENRPLVGTDPNNMTPRPYTNAEKTRLKEIEKENAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LDKKITKHQENIQEFEKPGYFRQVLESERQILNTQTQFKNEILKNVVNGISQSLQAGLIS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGAIDSLKTMNDGYLDVLRKYADSTAKSRDEAKADFDKTLDFVNKIVDSVFKAHSLGPA CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA