Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46447022

Identifier: 46447022

GI number: 46447022

Start: 1665596

End: 1666546

Strand: Direct

Name: 46447022

Synonym: pc1388

Alternate gene names: NA

Gene position: 1665596-1666546 (Clockwise)

Preceding gene: 46447021

Following gene: 46447023

Centisome position: 68.98

GC content: 32.18

Gene sequence:

>951_bases
ATGGATGCAAACCAATACAAAGAAATATTAAAAAGATTAGGCAAACAATTATCTTTAAATGAAAAGATACTTGCAGATCA
TCCTTCAGTGGGAAACCGTTTAATAATTCTACAGACATTTTTACATCATCTTGAAAGACAAACTGATTGGTCAAGAGAGG
GGCCCTTATCACGATTTAGTCAAACGTTTGAATTAGCGTTAATTGGGAATAAAACAGGCAATTCTCAAGCAGGTTTTATA
GGCCCTGCCTTAGAAAAATTAGAATATGGAATGGAAGTTTTAATTGAAAAGATTTTGAAACCTACTGATAAAAATCTTTG
TCCTTTGCTATTGCATTTTTCTCAAGTCATGACTTGGGCAATGATTTTTGTTTCCTCTCAAACTTTAGGAAATTGGAAGG
AGCTATTTCCTTTAAATGATTTCACCACAGCTAAGGAGGGGGGCGAACTTTTAAGGGAACTGGGAATTACTTTTATCCTT
GGATCCAAAGCAATTCCATCTTTCTATGCAGAACTTGGCGATCATTTAAATTTAGATGACCAAGCTCAAAGGCATTTAAG
TGATATTGGACTTTGTCATTTTCTCATCTTATTGTTCATCGTGAAGGATGTTCTGGAACTTCATGACGATTTTTTGTTTA
TTATTCAAAGATTTATGAAGCCTAGTTTAAAAAATATGGAAACATTAATAAATCAAAATCCCCATCCAACTCCTGAAGAG
CAAAAGATACTAGTGGCTTTAAGTTTTTTAATAAACAGCATTGATTTGCAAGATATACAATCTTTTAAACAGGCTTTAAA
AACTAGTTTTGAAGATTTTGAAATTTCACATGAACAGTTAAAAACTGACATGCAGGTATTAATCACAGTCTGTAAACAAT
TAAATGAGAGTTTAAAAAATATTTTTTATCAATCAGATTTAACGATGACAAGCATGACACAATCGGCATAA

Upstream 100 bases:

>100_bases
TTTATTAACTGTTTCAAATCTTATAAAGGAGACCACATACTTGCTCAAGCTTAAAGACATGTTTGATTAGATCAAGTTTG
GAGTTATTAAGATGCCGCAG

Downstream 100 bases:

>100_bases
ATAAGAGTTGTCGTTTATAAAGGAGATAATTATGGCAGAAATTGATAGTAATCTTAATAGAAGTCCTTTTGTTATGGAAA
ATCTTGGTATCGACCCAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MDANQYKEILKRLGKQLSLNEKILADHPSVGNRLIILQTFLHHLERQTDWSREGPLSRFSQTFELALIGNKTGNSQAGFI
GPALEKLEYGMEVLIEKILKPTDKNLCPLLLHFSQVMTWAMIFVSSQTLGNWKELFPLNDFTTAKEGGELLRELGITFIL
GSKAIPSFYAELGDHLNLDDQAQRHLSDIGLCHFLILLFIVKDVLELHDDFLFIIQRFMKPSLKNMETLINQNPHPTPEE
QKILVALSFLINSIDLQDIQSFKQALKTSFEDFEISHEQLKTDMQVLITVCKQLNESLKNIFYQSDLTMTSMTQSA

Sequences:

>Translated_316_residues
MDANQYKEILKRLGKQLSLNEKILADHPSVGNRLIILQTFLHHLERQTDWSREGPLSRFSQTFELALIGNKTGNSQAGFI
GPALEKLEYGMEVLIEKILKPTDKNLCPLLLHFSQVMTWAMIFVSSQTLGNWKELFPLNDFTTAKEGGELLRELGITFIL
GSKAIPSFYAELGDHLNLDDQAQRHLSDIGLCHFLILLFIVKDVLELHDDFLFIIQRFMKPSLKNMETLINQNPHPTPEE
QKILVALSFLINSIDLQDIQSFKQALKTSFEDFEISHEQLKTDMQVLITVCKQLNESLKNIFYQSDLTMTSMTQSA
>Mature_316_residues
MDANQYKEILKRLGKQLSLNEKILADHPSVGNRLIILQTFLHHLERQTDWSREGPLSRFSQTFELALIGNKTGNSQAGFI
GPALEKLEYGMEVLIEKILKPTDKNLCPLLLHFSQVMTWAMIFVSSQTLGNWKELFPLNDFTTAKEGGELLRELGITFIL
GSKAIPSFYAELGDHLNLDDQAQRHLSDIGLCHFLILLFIVKDVLELHDDFLFIIQRFMKPSLKNMETLINQNPHPTPEE
QKILVALSFLINSIDLQDIQSFKQALKTSFEDFEISHEQLKTDMQVLITVCKQLNESLKNIFYQSDLTMTSMTQSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36138; Mature: 36138

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDANQYKEILKRLGKQLSLNEKILADHPSVGNRLIILQTFLHHLERQTDWSREGPLSRFS
CCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHH
QTFELALIGNKTGNSQAGFIGPALEKLEYGMEVLIEKILKPTDKNLCPLLLHFSQVMTWA
HHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
MIFVSSQTLGNWKELFPLNDFTTAKEGGELLRELGITFILGSKAIPSFYAELGDHLNLDD
HHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCHHHEECCHHHHHHHHHHCCCCCCCH
QAQRHLSDIGLCHFLILLFIVKDVLELHDDFLFIIQRFMKPSLKNMETLINQNPHPTPEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH
QKILVALSFLINSIDLQDIQSFKQALKTSFEDFEISHEQLKTDMQVLITVCKQLNESLKN
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IFYQSDLTMTSMTQSA
HHHHCCCHHHHHHCCC
>Mature Secondary Structure
MDANQYKEILKRLGKQLSLNEKILADHPSVGNRLIILQTFLHHLERQTDWSREGPLSRFS
CCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHH
QTFELALIGNKTGNSQAGFIGPALEKLEYGMEVLIEKILKPTDKNLCPLLLHFSQVMTWA
HHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
MIFVSSQTLGNWKELFPLNDFTTAKEGGELLRELGITFILGSKAIPSFYAELGDHLNLDD
HHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCHHHEECCHHHHHHHHHHCCCCCCCH
QAQRHLSDIGLCHFLILLFIVKDVLELHDDFLFIIQRFMKPSLKNMETLINQNPHPTPEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH
QKILVALSFLINSIDLQDIQSFKQALKTSFEDFEISHEQLKTDMQVLITVCKQLNESLKN
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IFYQSDLTMTSMTQSA
HHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA