Click here to switch to the map view.

The map label for this gene is lcrH

Identifier: 46447020

GI number: 46447020

Start: 1664295

End: 1664888

Strand: Direct

Name: lcrH

Synonym: pc1386

Alternate gene names: NA

Gene position: 1664295-1664888 (Clockwise)

Preceding gene: 46447019

Following gene: 46447021

Centisome position: 68.93

GC content: 32.49

Gene sequence:

>594_bases
ATGACAATTTCACAAGATCAAATTCGTGAAGCTATTGAAAAAGCTGACATCAATCTGTCTCCTAATATGCAGAAAAAAAC
AGAAGAAGCCATCGGAAAAATTTTAGGAGGGAATATCCCTCCTAAAGAAGCTTTAGGATTCGATGAAAATGCGATGAATC
AAATTTATCGTCATGGTTTCAATGAATTTCAATCAGGGCGCTATGATGAAGCATTAAAAATTTTTACATTTCTTAGACAA
ATAGATGTTGGAAATTTTGACTATACCTTTGCTATTGCAGCTTGCCACCAATTTAAACAAGAATACTCGGAAGCAGCAGC
CAATTACATTATTTGCACTTACATCGATCGATTAAATCCTGTTCCCCACTTTCATCTTTACGATTGTTTTGTCAAATTAA
ACTTTCCTATGTCTGCTTTAAAAGCCATCAAAGAGACAATAGCTTTAGCCGAGTTAAATCCTAGAGATAGCGAATTAAAA
GAAAGAGCTTTATTAGAGTACAAATCTTTCAAAAAAGGTCTAAAAAAATATTTAAAAGAAAATTTTGACAAAGAGAATTT
AGACAAGGATTTCGTTGATATAGAGGGAGATTAA

Upstream 100 bases:

>100_bases
TATTGCTCAGCTACAGCAAATGTACACAAGCATTTATGATGCCGCTGCAAAAACTCAAAATCAAATGTTCAATGCCCTTC
AGGGATAAGGAGAAAAAATT

Downstream 100 bases:

>100_bases
TTATGAATAATCCTTCAGTAGGATATGGATTTTCTAATAGTCCAACATCGCCCGATTATAATGATTTAAACGCGCTTTCG
AAATCTCAAACCCTCACTAA

Product: putative low calcium response protein H

Products: NA

Alternate protein names: Type III Secretion Chaperone SycD/LcrH; Regulatory Protein LcrH And Chaperone SycD

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTISQDQIREAIEKADINLSPNMQKKTEEAIGKILGGNIPPKEALGFDENAMNQIYRHGFNEFQSGRYDEALKIFTFLRQ
IDVGNFDYTFAIAACHQFKQEYSEAAANYIICTYIDRLNPVPHFHLYDCFVKLNFPMSALKAIKETIALAELNPRDSELK
ERALLEYKSFKKGLKKYLKENFDKENLDKDFVDIEGD

Sequences:

>Translated_197_residues
MTISQDQIREAIEKADINLSPNMQKKTEEAIGKILGGNIPPKEALGFDENAMNQIYRHGFNEFQSGRYDEALKIFTFLRQ
IDVGNFDYTFAIAACHQFKQEYSEAAANYIICTYIDRLNPVPHFHLYDCFVKLNFPMSALKAIKETIALAELNPRDSELK
ERALLEYKSFKKGLKKYLKENFDKENLDKDFVDIEGD
>Mature_196_residues
TISQDQIREAIEKADINLSPNMQKKTEEAIGKILGGNIPPKEALGFDENAMNQIYRHGFNEFQSGRYDEALKIFTFLRQI
DVGNFDYTFAIAACHQFKQEYSEAAANYIICTYIDRLNPVPHFHLYDCFVKLNFPMSALKAIKETIALAELNPRDSELKE
RALLEYKSFKKGLKKYLKENFDKENLDKDFVDIEGD

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22764; Mature: 22633

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISQDQIREAIEKADINLSPNMQKKTEEAIGKILGGNIPPKEALGFDENAMNQIYRHGF
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHH
NEFQSGRYDEALKIFTFLRQIDVGNFDYTFAIAACHQFKQEYSEAAANYIICTYIDRLNP
HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
VPHFHLYDCFVKLNFPMSALKAIKETIALAELNPRDSELKERALLEYKSFKKGLKKYLKE
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NFDKENLDKDFVDIEGD
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TISQDQIREAIEKADINLSPNMQKKTEEAIGKILGGNIPPKEALGFDENAMNQIYRHGF
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHH
NEFQSGRYDEALKIFTFLRQIDVGNFDYTFAIAACHQFKQEYSEAAANYIICTYIDRLNP
HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
VPHFHLYDCFVKLNFPMSALKAIKETIALAELNPRDSELKERALLEYKSFKKGLKKYLKE
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NFDKENLDKDFVDIEGD
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA