| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447017
Identifier: 46447017
GI number: 46447017
Start: 1659904
End: 1661211
Strand: Direct
Name: 46447017
Synonym: pc1383
Alternate gene names: NA
Gene position: 1659904-1661211 (Clockwise)
Preceding gene: 46447016
Following gene: 46447018
Centisome position: 68.75
GC content: 35.47
Gene sequence:
>1308_bases ATGAATATGGCTGATAATATTACGTTTGACGATGGATATAATCAAACAAGTTTTTTAGATGGGCTACAATACGTTCCTAA TGCCGTTCTGGGTAATGATATCCCCATTACGGGCTTACCTGCTGGTTATTATGCAAGTAATAATCTTACTGCTTTACCTA CGAGTATCTTACCATATAAACTAGCGACAGAATTTCCAGGCCAAACTCCCCGTACTACGGCAGAAGATTTTGATGGTTTT TTAAGGCAATATAGTCTTCCAAATACTCCAGGAGCTGTTATTCCGACTAAAACGTTTACAAGTTTATCCGGCCTAGCATC AGCTTGGTATGTGGATTTTATGAATGAAAGTAGCTCAAAAAATGGATTATACAACAGTTTATTACAAGAATTTGCATCTG CGTTAAATATTCAAATTGATAGCTCAGGAAATATCACAGGGGGTGATTGGCAAATTTTGACCGGTACTCCTACTGTCAGC CCTGCTGTCAATTTTAGTGCTTCCAGTGCAAATAACCCTTTTATTCGCGCTTTCAACAATTTTTTGAGTACTTATACTTA TCCGCAATCGCCTTTATCAGGAGATCTAGCTTATTATAAAAATTTTCTAGATCAATGGCATTCCTATTTGTCAAATATTA GTTTACTCAATACTCCCGATTCGAGCACTCCTGCCAACTTTCAAAATTTAATAAGCTATGAAGCGATTTACAAAGCTTAT GCCAAAGATCCATCAGATGAAGCATTTAAACTACGTTTAAAACAATTTTACCAAGAAGAGATGAGTTCCAAGGGATATTT TATGCCCAGCCAAAGTTTGGCAGATTGGGTCACCGCCATTCGTAATGAAAACAATGTCAACATGAATTTAGAATTAATTG GTTCTTCTCTAGCAGGAAATAGTTCAGAAAAAGCTCTTGTGCTTAATAGAATTATATTGCTATTGATTTCACTTATAAAA ACTTTACAGGATGTGGGGATTGCGCAAGCTAATCGACTAACGTATCTTACTAAATATCAAAACGTTTATACAGCTTTACA AACACAAATACCTGTCTTTTTAAAAGATGGTTCCAATCCATTAGGAGGTTCCTCAACAGAAGCTGGGCAAACTCGTAATG ACTTAAACTCTTCTTTTAACGGTATTTTAACTGATAATTTAAGATCGCTAAGAGGAATTCAAGAGGATAATGCTAAAAAA CTGCAATCCAAAGTTAATTCAACTAACGATGCAGTAAACCAACAGACAGATATGGTATCAACGTTTATCCAACAAATGCA AACCCTTTTAAACGCAATTTTACGTTAA
Upstream 100 bases:
>100_bases ATATCTAGATAATTAACATATTTTTTGAATTATTAATAGTTTTTAGAAATTAAAAATATGAAATTGAAATAAAGCTATTT CCTTGAGGTCCTTAAGGAGG
Downstream 100 bases:
>100_bases GAAATAAAAAATTTAAGTATTCACTCAATAAACGCAAAATTCACTAGATTAATGATATGAAGCATTCTGAGTGTAAAAAA GAACTTTCTCATTAAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MNMADNITFDDGYNQTSFLDGLQYVPNAVLGNDIPITGLPAGYYASNNLTALPTSILPYKLATEFPGQTPRTTAEDFDGF LRQYSLPNTPGAVIPTKTFTSLSGLASAWYVDFMNESSSKNGLYNSLLQEFASALNIQIDSSGNITGGDWQILTGTPTVS PAVNFSASSANNPFIRAFNNFLSTYTYPQSPLSGDLAYYKNFLDQWHSYLSNISLLNTPDSSTPANFQNLISYEAIYKAY AKDPSDEAFKLRLKQFYQEEMSSKGYFMPSQSLADWVTAIRNENNVNMNLELIGSSLAGNSSEKALVLNRIILLLISLIK TLQDVGIAQANRLTYLTKYQNVYTALQTQIPVFLKDGSNPLGGSSTEAGQTRNDLNSSFNGILTDNLRSLRGIQEDNAKK LQSKVNSTNDAVNQQTDMVSTFIQQMQTLLNAILR
Sequences:
>Translated_435_residues MNMADNITFDDGYNQTSFLDGLQYVPNAVLGNDIPITGLPAGYYASNNLTALPTSILPYKLATEFPGQTPRTTAEDFDGF LRQYSLPNTPGAVIPTKTFTSLSGLASAWYVDFMNESSSKNGLYNSLLQEFASALNIQIDSSGNITGGDWQILTGTPTVS PAVNFSASSANNPFIRAFNNFLSTYTYPQSPLSGDLAYYKNFLDQWHSYLSNISLLNTPDSSTPANFQNLISYEAIYKAY AKDPSDEAFKLRLKQFYQEEMSSKGYFMPSQSLADWVTAIRNENNVNMNLELIGSSLAGNSSEKALVLNRIILLLISLIK TLQDVGIAQANRLTYLTKYQNVYTALQTQIPVFLKDGSNPLGGSSTEAGQTRNDLNSSFNGILTDNLRSLRGIQEDNAKK LQSKVNSTNDAVNQQTDMVSTFIQQMQTLLNAILR >Mature_435_residues MNMADNITFDDGYNQTSFLDGLQYVPNAVLGNDIPITGLPAGYYASNNLTALPTSILPYKLATEFPGQTPRTTAEDFDGF LRQYSLPNTPGAVIPTKTFTSLSGLASAWYVDFMNESSSKNGLYNSLLQEFASALNIQIDSSGNITGGDWQILTGTPTVS PAVNFSASSANNPFIRAFNNFLSTYTYPQSPLSGDLAYYKNFLDQWHSYLSNISLLNTPDSSTPANFQNLISYEAIYKAY AKDPSDEAFKLRLKQFYQEEMSSKGYFMPSQSLADWVTAIRNENNVNMNLELIGSSLAGNSSEKALVLNRIILLLISLIK TLQDVGIAQANRLTYLTKYQNVYTALQTQIPVFLKDGSNPLGGSSTEAGQTRNDLNSSFNGILTDNLRSLRGIQEDNAKK LQSKVNSTNDAVNQQTDMVSTFIQQMQTLLNAILR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47880; Mature: 47880
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMADNITFDDGYNQTSFLDGLQYVPNAVLGNDIPITGLPAGYYASNNLTALPTSILPYK CCCCCCCEECCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHH LATEFPGQTPRTTAEDFDGFLRQYSLPNTPGAVIPTKTFTSLSGLASAWYVDFMNESSSK HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCC NGLYNSLLQEFASALNIQIDSSGNITGGDWQILTGTPTVSPAVNFSASSANNPFIRAFNN CHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH FLSTYTYPQSPLSGDLAYYKNFLDQWHSYLSNISLLNTPDSSTPANFQNLISYEAIYKAY HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHH AKDPSDEAFKLRLKQFYQEEMSSKGYFMPSQSLADWVTAIRNENNVNMNLELIGSSLAGN HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHCCC SSEKALVLNRIILLLISLIKTLQDVGIAQANRLTYLTKYQNVYTALQTQIPVFLKDGSNP CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHCCCEEEECCCCC LGGSSTEAGQTRNDLNSSFNGILTDNLRSLRGIQEDNAKKLQSKVNSTNDAVNQQTDMVS CCCCCCCCCCCHHHHHHHCCCEEHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH TFIQQMQTLLNAILR HHHHHHHHHHHHHCC >Mature Secondary Structure MNMADNITFDDGYNQTSFLDGLQYVPNAVLGNDIPITGLPAGYYASNNLTALPTSILPYK CCCCCCCEECCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHH LATEFPGQTPRTTAEDFDGFLRQYSLPNTPGAVIPTKTFTSLSGLASAWYVDFMNESSSK HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCC NGLYNSLLQEFASALNIQIDSSGNITGGDWQILTGTPTVSPAVNFSASSANNPFIRAFNN CHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH FLSTYTYPQSPLSGDLAYYKNFLDQWHSYLSNISLLNTPDSSTPANFQNLISYEAIYKAY HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHH AKDPSDEAFKLRLKQFYQEEMSSKGYFMPSQSLADWVTAIRNENNVNMNLELIGSSLAGN HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHCCC SSEKALVLNRIILLLISLIKTLQDVGIAQANRLTYLTKYQNVYTALQTQIPVFLKDGSNP CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHCCCEEEECCCCC LGGSSTEAGQTRNDLNSSFNGILTDNLRSLRGIQEDNAKKLQSKVNSTNDAVNQQTDMVS CCCCCCCCCCCHHHHHHHCCCEEHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH TFIQQMQTLLNAILR HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA