Click here to switch to the map view.

The map label for this gene is cyoD [H]

Identifier: 46446826

GI number: 46446826

Start: 1421129

End: 1421491

Strand: Direct

Name: cyoD [H]

Synonym: pc1192

Alternate gene names: 46446826

Gene position: 1421129-1421491 (Clockwise)

Preceding gene: 46446825

Following gene: 46446827

Centisome position: 58.86

GC content: 34.71

Gene sequence:

>363_bases
ATGTGTCATGAACTAAATTTAGATGATGTAAAGAAAGAATGGCATGGAACAATTAAATCTTATGTCATAGGCTTTACAGC
CTCGTTAATCTTAACACTCCTTTCCTTTTCCTTTGTTTTTTTTAAAATTTTAAAAGGACAAGATTTAGTCTATACCTTGA
TAGGTTTCGCCCTAACACAGACATTTGTTCAGCTAGTCTTCTTTTTGCATATTGGGCAAGAACCTAAACCCCGGTGGGAA
AGCATTGCTTTAGGCTTTACAATATTAATTTTACTCATCGTCGTTATCGGATCACTTTGGATTATGCATGATTTGAATGA
ACGCATGATGGGGTATATGACCCAAGAAATGACACATGATTAA

Upstream 100 bases:

>100_bases
TACTTTTCGCCGTCTAGCCCTGTTTAGCTTGTTTTGGCATTTTCTTGATTTAATTTGGATTTCGATATTTACATTTGTTT
ATTTACTGGGAGTAGCTTAA

Downstream 100 bases:

>100_bases
CTACTATTTATTATTGACTAAGCCAGGAATTATTCTTGGCAACCTCGTCACAGTGATGGCCGGTTTTTTATTAGCTTCAA
AAGGGCAATTTCAATTTGGA

Product: putative cytochrome O ubiquinol oxidase chain IV cyoD

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MCHELNLDDVKKEWHGTIKSYVIGFTASLILTLLSFSFVFFKILKGQDLVYTLIGFALTQTFVQLVFFLHIGQEPKPRWE
SIALGFTILILLIVVIGSLWIMHDLNERMMGYMTQEMTHD

Sequences:

>Translated_120_residues
MCHELNLDDVKKEWHGTIKSYVIGFTASLILTLLSFSFVFFKILKGQDLVYTLIGFALTQTFVQLVFFLHIGQEPKPRWE
SIALGFTILILLIVVIGSLWIMHDLNERMMGYMTQEMTHD
>Mature_120_residues
MCHELNLDDVKKEWHGTIKSYVIGFTASLILTLLSFSFVFFKILKGQDLVYTLIGFALTQTFVQLVFFLHIGQEPKPRWE
SIALGFTILILLIVVIGSLWIMHDLNERMMGYMTQEMTHD

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=96, Percent_Identity=39.5833333333333, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 13899; Mature: 13899

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHELNLDDVKKEWHGTIKSYVIGFTASLILTLLSFSFVFFKILKGQDLVYTLIGFALTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TFVQLVFFLHIGQEPKPRWESIALGFTILILLIVVIGSLWIMHDLNERMMGYMTQEMTHD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCHELNLDDVKKEWHGTIKSYVIGFTASLILTLLSFSFVFFKILKGQDLVYTLIGFALTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TFVQLVFFLHIGQEPKPRWESIALGFTILILLIVVIGSLWIMHDLNERMMGYMTQEMTHD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]