| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446799
Identifier: 46446799
GI number: 46446799
Start: 1393174
End: 1394151
Strand: Reverse
Name: 46446799
Synonym: pc1165
Alternate gene names: NA
Gene position: 1394151-1393174 (Counterclockwise)
Preceding gene: 46446801
Following gene: 46446798
Centisome position: 57.74
GC content: 36.91
Gene sequence:
>978_bases ATGACATTACCCAAATTGCTTGCCTTTCTCTGTATTATTCTTTTTGGAGCGATTGGAATAGCTGCAATTTTTAAGAGTTC CTCTACTCCGGTATCTACAAGACCGTCAAATCAAATTCCTCTTGAAATTGATTTAGACCAAAATATACAAGTAATTACCC CTGCTTTGGCAGTTGCTCAGCAATCACGGTCTCCCGATTTTTCATTATCAACGCTCGAGCTTCCTGAAGCTAATCGAATT GAAGAATTGTTCGTTAAAGATTCAAAGTTACCCATTGTAGAAACAATTACGTATAAAAGTCGCGTCAATTGGCAAAAAGG TCGCCCTGCTTGGTTATCTGATTATGCCGCTCATTTTGAAACCTCAAGACATTTTATTGCTCGAAGTCTTAATGGTAAAC CTGATTATTTAAAACAAGATTTGGCAGAAGGAGAGCGTTTTAACGTTCTTTGCAAAGATAAAAATATTCAATTTTACCTC ATTGTTGATACCTCTCGTTGTAAAATGTGGTTTTATTATTTAGCTGATGATGAAAAAAAACCTGTTTTAATCAAAACGTA TCCGGTGGGATTAGGAAGATTGGATTCTTCTAGTAGTTCGGGCTTATTAACACCTCTAGGAAAATATTCTTTAGGAGATC GCATTGCGACTTATAAACCGAAATCCATGGGCATTTATCAAGGAAAGAAAACGGAAATGATTACTGTTTTTGGAACTAGG TGGATTCCTTTCGAGCAAGAAATTGGTCATACAACTGCTCCTGCTAAAGGATTCGGTATTCATGGTACACCCTGGGAATA TCAATCTGGATTAGCAGTGGATCAAATTGATAGTGTAGGGAAATATCAGAGTGACGGATGCATTCGTTTAACGACGCCTG ATATGGAAGAGTTATTTTCAATTATTGTGACTAAGCCAACAACAATTGAAATTGTTAGAGATTTTTCTGAGGCGACCTTA CCAGGAATACTGGATTAA
Upstream 100 bases:
>100_bases TTAGAGGTTTTATCTTTTTTGGCAAAAAGATTTTAACTTCATAACATGAATGAGAAATATAGGTTCTTAAGCCTACATTT GACGAAAAAAGGTTAAATAC
Downstream 100 bases:
>100_bases ATAAATCCTAAATTATTAAAAATTAAATAGATAGAACCTTTAAAGGAAGGAGTACTCCGTTGGATATTTTACCCCATGAA AAGCAAATTCATGAGTATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MTLPKLLAFLCIILFGAIGIAAIFKSSSTPVSTRPSNQIPLEIDLDQNIQVITPALAVAQQSRSPDFSLSTLELPEANRI EELFVKDSKLPIVETITYKSRVNWQKGRPAWLSDYAAHFETSRHFIARSLNGKPDYLKQDLAEGERFNVLCKDKNIQFYL IVDTSRCKMWFYYLADDEKKPVLIKTYPVGLGRLDSSSSSGLLTPLGKYSLGDRIATYKPKSMGIYQGKKTEMITVFGTR WIPFEQEIGHTTAPAKGFGIHGTPWEYQSGLAVDQIDSVGKYQSDGCIRLTTPDMEELFSIIVTKPTTIEIVRDFSEATL PGILD
Sequences:
>Translated_325_residues MTLPKLLAFLCIILFGAIGIAAIFKSSSTPVSTRPSNQIPLEIDLDQNIQVITPALAVAQQSRSPDFSLSTLELPEANRI EELFVKDSKLPIVETITYKSRVNWQKGRPAWLSDYAAHFETSRHFIARSLNGKPDYLKQDLAEGERFNVLCKDKNIQFYL IVDTSRCKMWFYYLADDEKKPVLIKTYPVGLGRLDSSSSSGLLTPLGKYSLGDRIATYKPKSMGIYQGKKTEMITVFGTR WIPFEQEIGHTTAPAKGFGIHGTPWEYQSGLAVDQIDSVGKYQSDGCIRLTTPDMEELFSIIVTKPTTIEIVRDFSEATL PGILD >Mature_324_residues TLPKLLAFLCIILFGAIGIAAIFKSSSTPVSTRPSNQIPLEIDLDQNIQVITPALAVAQQSRSPDFSLSTLELPEANRIE ELFVKDSKLPIVETITYKSRVNWQKGRPAWLSDYAAHFETSRHFIARSLNGKPDYLKQDLAEGERFNVLCKDKNIQFYLI VDTSRCKMWFYYLADDEKKPVLIKTYPVGLGRLDSSSSSGLLTPLGKYSLGDRIATYKPKSMGIYQGKKTEMITVFGTRW IPFEQEIGHTTAPAKGFGIHGTPWEYQSGLAVDQIDSVGKYQSDGCIRLTTPDMEELFSIIVTKPTTIEIVRDFSEATLP GILD
Specific function: Unknown
COG id: COG1376
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36372; Mature: 36241
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPKLLAFLCIILFGAIGIAAIFKSSSTPVSTRPSNQIPLEIDLDQNIQVITPALAVAQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHH QSRSPDFSLSTLELPEANRIEELFVKDSKLPIVETITYKSRVNWQKGRPAWLSDYAAHFE HCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEEEHHCCCCCCCCCHHHHHHHHHHH TSRHFIARSLNGKPDYLKQDLAEGERFNVLCKDKNIQFYLIVDTSRCKMWFYYLADDEKK HHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCC PVLIKTYPVGLGRLDSSSSSGLLTPLGKYSLGDRIATYKPKSMGIYQGKKTEMITVFGTR CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCC WIPFEQEIGHTTAPAKGFGIHGTPWEYQSGLAVDQIDSVGKYQSDGCIRLTTPDMEELFS CCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHCCCCCCCCEEEECCCCHHHHHH IIVTKPTTIEIVRDFSEATLPGILD HHHCCCCEEEHHHHHHHHCCCCCCC >Mature Secondary Structure TLPKLLAFLCIILFGAIGIAAIFKSSSTPVSTRPSNQIPLEIDLDQNIQVITPALAVAQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHH QSRSPDFSLSTLELPEANRIEELFVKDSKLPIVETITYKSRVNWQKGRPAWLSDYAAHFE HCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEEEHHCCCCCCCCCHHHHHHHHHHH TSRHFIARSLNGKPDYLKQDLAEGERFNVLCKDKNIQFYLIVDTSRCKMWFYYLADDEKK HHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCC PVLIKTYPVGLGRLDSSSSSGLLTPLGKYSLGDRIATYKPKSMGIYQGKKTEMITVFGTR CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCC WIPFEQEIGHTTAPAKGFGIHGTPWEYQSGLAVDQIDSVGKYQSDGCIRLTTPDMEELFS CCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHCCCCCCCCEEEECCCCHHHHHH IIVTKPTTIEIVRDFSEATLPGILD HHHCCCCEEEHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA