Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446793

Identifier: 46446793

GI number: 46446793

Start: 1387312

End: 1387884

Strand: Direct

Name: 46446793

Synonym: pc1159

Alternate gene names: NA

Gene position: 1387312-1387884 (Clockwise)

Preceding gene: 46446786

Following gene: 46446794

Centisome position: 57.46

GC content: 38.05

Gene sequence:

>573_bases
GTGTTATTTTTTAACATGATACCCATTATAGCTATGAAATATTATCTTCTCATCCCTTTCTTTTATTTGCTTATTTTTTC
AACTCTTCATCCTGTCCAGGGGCAAGAAACAGCATACGGGGAACAACTCGGTGAAATAGATTTTTCTCCAGAGTCGCAAA
ACCATTTACCACAAAAAAGTATTTCTCTTGAAGAAAACTTGCACGATCCTTTAATAGATCCAGAGTTGACGGAAACAGAT
CATTTTCAAGCAAAATTTATGAATATGTTATTCATCCTAGGACTATTAATTAGCTTTATGCTCTTGGCTTCTTGGATGCT
CAAACGCATGACTAAATCAAAAGTCACTCAAATGAACCAAGCCAGCTCCATTAAGGTCCTAGAAACTAGGCACTTAACAC
CACGATCTACTATTTATTTGATTGAAGTGAAAGGACAGCATCTTTTAATTGGCGAATCTGTAGCCGGGGTTTCCCATCTC
GCAACCATCGGATTTTTGGAAGAAGGGGACGACACTAATTACAAGCGCCCTGCAATTCCCCCTTATTTTTCCAATCCGAC
TAAGCTATCCTAA

Upstream 100 bases:

>100_bases
GAATGCTTTCTGTTTCTGCCGTGACAGTTCCATCTATATCTAATGCAAATATTCCTTTTATTTTGCGAAAAAACATAGGA
AAAAAACTGTTGAGAATGTA

Downstream 100 bases:

>100_bases
GATGAAATTTCAGATTTAAAAATTGAAAATTTTTTGAATCTAGCCTATTTTTTATACGCCATCTTAAGTGGCTATTGCGA
GAATTTAATGAAACAGTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSPESQNHLPQKSISLEENLHDPLIDPELTETD
HFQAKFMNMLFILGLLISFMLLASWMLKRMTKSKVTQMNQASSIKVLETRHLTPRSTIYLIEVKGQHLLIGESVAGVSHL
ATIGFLEEGDDTNYKRPAIPPYFSNPTKLS

Sequences:

>Translated_190_residues
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSPESQNHLPQKSISLEENLHDPLIDPELTETD
HFQAKFMNMLFILGLLISFMLLASWMLKRMTKSKVTQMNQASSIKVLETRHLTPRSTIYLIEVKGQHLLIGESVAGVSHL
ATIGFLEEGDDTNYKRPAIPPYFSNPTKLS
>Mature_190_residues
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSPESQNHLPQKSISLEENLHDPLIDPELTETD
HFQAKFMNMLFILGLLISFMLLASWMLKRMTKSKVTQMNQASSIKVLETRHLTPRSTIYLIEVKGQHLLIGESVAGVSHL
ATIGFLEEGDDTNYKRPAIPPYFSNPTKLS

Specific function: Unknown

COG id: COG3190

COG function: function code N; Flagellar biogenesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21709; Mature: 21709

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSPESQNHLPQKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHH
ISLEENLHDPLIDPELTETDHFQAKFMNMLFILGLLISFMLLASWMLKRMTKSKVTQMNQ
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASSIKVLETRHLTPRSTIYLIEVKGQHLLIGESVAGVSHLATIGFLEEGDDTNYKRPAIP
CCCEEEHHHCCCCCCCEEEEEEECCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PYFSNPTKLS
CCCCCCCCCC
>Mature Secondary Structure
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSPESQNHLPQKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHH
ISLEENLHDPLIDPELTETDHFQAKFMNMLFILGLLISFMLLASWMLKRMTKSKVTQMNQ
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASSIKVLETRHLTPRSTIYLIEVKGQHLLIGESVAGVSHLATIGFLEEGDDTNYKRPAIP
CCCEEEHHHCCCCCCCEEEEEEECCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PYFSNPTKLS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA