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The map label for this gene is xerD [H]

Identifier: 46446777

GI number: 46446777

Start: 1374334

End: 1375344

Strand: Reverse

Name: xerD [H]

Synonym: pc1143

Alternate gene names: 46446777

Gene position: 1375344-1374334 (Counterclockwise)

Preceding gene: 46446785

Following gene: 46446772

Centisome position: 56.96

GC content: 36.1

Gene sequence:

>1011_bases
GTGTTAGCAAAATTTAGGTCGGTAGATATGGTCAATATGGAAAATCAGTTAGCAATACAAAAAATTGAAAATTTCGAAGT
TGGCGAATATCTTGATTTGGTCAAAACAGCAAAAGAATATGCGACTTTTGCAAGGTCGTTTAATACTAACAAATCTTATC
GATCTGACTGGGACGATTTTGTTTTTTGGTGTCAGGAAAAAAATTTAAGACCATTACCAGCTTTGCCTCAAACGATTGTC
GTCTATTTGATTAGTCGAGCTGATAACGCATGGATCAATCAAAAAGGGAAATTACAAAAACCTCTCAAAATTTCTAGTTT
AAGCCGAAGACTTACCTCTATTAGCCAAGCTCACAAATTAGCTAAACAGCCTTTCGACAAAAATTGTCCTGAAATACAAG
AAGTTTGGAAAGGAATAAAAAATAAGTTAGGATCTGCCCAAATCCGTAAAGACCCGATTTTACTAGATGATTTACGCAAG
ATGATTGAATCAATTAATAATGACAATAGTAAAGCAAATTCGTTGTCAGGAATGCGTGACAAGGCTTTATTGTTACTGGG
ATTTGTAGGCGCATTTCGAAGATCAGAATTAGTTTCTTTAACGATTGATGACATTAAATTTGTCAGAGAAGGCTTGCAAA
TTACGCTTAGGAAATCGAAAACCGACCAAGAAGGGAAGGAGAGAATCATTGCTATTCCTTATGGATCAAACATTCTCACT
TGCCCTGTCAGAACCTTAAATGATTGGCTTGATTGTTCTAAAATTAGCGAAGGGCTATTATTTCGACCGATCAATCGGCA
TGGTCAAATCATGGATAAAGCTCTAACTTCCAAATCCGTTGCATTGATTATTAAGCGGAACAAACATTTAGAAAATCAGA
AAAATTCATTTTCAGGGCATAGCTTACGAGCTGGATTTGCTACAACTGCTGCCATCTTTGGTGTTCCTGAGCATCTGATC
ATGAAGCAAACAGGCCATAAAAGCTTTGATACCATTAGAAGGTATATTTGA

Upstream 100 bases:

>100_bases
GTACACATTTAGCAATCTCTAAAAAATAGTCCTAAGTTCCGATAACGCATTATTATCGGTAGTTAGAAAAAATAGAAAAA
TAGACAATGAAAAAAACAAA

Downstream 100 bases:

>100_bases
TTGGGAAACATGTGGACGGAAAATGCCGCCACTAAAATTGGTTTATAAGTTTAATTTCCATCCTATAATATATTTTATAG
CGAATATTTCTCTTAGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLAKFRSVDMVNMENQLAIQKIENFEVGEYLDLVKTAKEYATFARSFNTNKSYRSDWDDFVFWCQEKNLRPLPALPQTIV
VYLISRADNAWINQKGKLQKPLKISSLSRRLTSISQAHKLAKQPFDKNCPEIQEVWKGIKNKLGSAQIRKDPILLDDLRK
MIESINNDNSKANSLSGMRDKALLLLGFVGAFRRSELVSLTIDDIKFVREGLQITLRKSKTDQEGKERIIAIPYGSNILT
CPVRTLNDWLDCSKISEGLLFRPINRHGQIMDKALTSKSVALIIKRNKHLENQKNSFSGHSLRAGFATTAAIFGVPEHLI
MKQTGHKSFDTIRRYI

Sequences:

>Translated_336_residues
MLAKFRSVDMVNMENQLAIQKIENFEVGEYLDLVKTAKEYATFARSFNTNKSYRSDWDDFVFWCQEKNLRPLPALPQTIV
VYLISRADNAWINQKGKLQKPLKISSLSRRLTSISQAHKLAKQPFDKNCPEIQEVWKGIKNKLGSAQIRKDPILLDDLRK
MIESINNDNSKANSLSGMRDKALLLLGFVGAFRRSELVSLTIDDIKFVREGLQITLRKSKTDQEGKERIIAIPYGSNILT
CPVRTLNDWLDCSKISEGLLFRPINRHGQIMDKALTSKSVALIIKRNKHLENQKNSFSGHSLRAGFATTAAIFGVPEHLI
MKQTGHKSFDTIRRYI
>Mature_336_residues
MLAKFRSVDMVNMENQLAIQKIENFEVGEYLDLVKTAKEYATFARSFNTNKSYRSDWDDFVFWCQEKNLRPLPALPQTIV
VYLISRADNAWINQKGKLQKPLKISSLSRRLTSISQAHKLAKQPFDKNCPEIQEVWKGIKNKLGSAQIRKDPILLDDLRK
MIESINNDNSKANSLSGMRDKALLLLGFVGAFRRSELVSLTIDDIKFVREGLQITLRKSKTDQEGKERIIAIPYGSNILT
CPVRTLNDWLDCSKISEGLLFRPINRHGQIMDKALTSKSVALIIKRNKHLENQKNSFSGHSLRAGFATTAAIFGVPEHLI
MKQTGHKSFDTIRRYI

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38369; Mature: 38369

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKFRSVDMVNMENQLAIQKIENFEVGEYLDLVKTAKEYATFARSFNTNKSYRSDWDDF
CCCCCCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHH
VFWCQEKNLRPLPALPQTIVVYLISRADNAWINQKGKLQKPLKISSLSRRLTSISQAHKL
EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AKQPFDKNCPEIQEVWKGIKNKLGSAQIRKDPILLDDLRKMIESINNDNSKANSLSGMRD
HHCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHH
KALLLLGFVGAFRRSELVSLTIDDIKFVREGLQITLRKSKTDQEGKERIIAIPYGSNILT
HHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECCCCEEE
CPVRTLNDWLDCSKISEGLLFRPINRHGQIMDKALTSKSVALIIKRNKHLENQKNSFSGH
CCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
SLRAGFATTAAIFGVPEHLIMKQTGHKSFDTIRRYI
CCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MLAKFRSVDMVNMENQLAIQKIENFEVGEYLDLVKTAKEYATFARSFNTNKSYRSDWDDF
CCCCCCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHH
VFWCQEKNLRPLPALPQTIVVYLISRADNAWINQKGKLQKPLKISSLSRRLTSISQAHKL
EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AKQPFDKNCPEIQEVWKGIKNKLGSAQIRKDPILLDDLRKMIESINNDNSKANSLSGMRD
HHCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHH
KALLLLGFVGAFRRSELVSLTIDDIKFVREGLQITLRKSKTDQEGKERIIAIPYGSNILT
HHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECCCCEEE
CPVRTLNDWLDCSKISEGLLFRPINRHGQIMDKALTSKSVALIIKRNKHLENQKNSFSGH
CCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
SLRAGFATTAAIFGVPEHLIMKQTGHKSFDTIRRYI
CCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]