| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446772
Identifier: 46446772
GI number: 46446772
Start: 1369113
End: 1370231
Strand: Reverse
Name: 46446772
Synonym: pc1138
Alternate gene names: NA
Gene position: 1370231-1369113 (Counterclockwise)
Preceding gene: 46446777
Following gene: 46446764
Centisome position: 56.75
GC content: 33.6
Gene sequence:
>1119_bases ATGCAAAAAATTCAAAATAGCTGGAAAACCCACTTAAATCAGATCAATTTTAAATTATCTTTTAAAATCAGTTTAGCTGC TTTAACCAGTTTATATGTTTGCCATGAGTTAGATCGATATATTAAACATCCTGATATTTTTACAAGCGGGCTATGGTGTG TCATCGCCTCTATTTTCGCTTCGTTGCCCACTTTAGGAGGGACATATAAAGCAATTTGGAATCGATTTTTTGGAGTCTTA GTGGGATCAGCGATAGGGGCTTTTTTCGCCTCTCAATGGGGAGCTCATCCTTTTGTTTTAGGAATGGCTGTTTTTACTAC CTCGATAATCAGTTTTTTATGCGGGTTAAAAGAGAGCTATCGAATGGCTTGTTTATCAGTGGCAGTTATTATCATTCCTT GGGGAATGCATCCTACCCTGAGTCCTTGGGCTTATGCTTTTTACCGTTTTTTAGATACTTGCATTGGATTGGGGGTAGCG GTCTTTATTGCTAAAGCTGTTTGGCCATCACAAGCATTCACAGTTATGCAAAAACAAATGTCAGATGTTCTCAATCAAAT TAGACAAGCTTATGAATACATTGTAGTTTCGGCTGATCATTTAAATAAAAGTGATGCAATTTTAAAAAGTCTTTTAAACG ATGTTGACCAAACATTTAACCAAATTCATGTAAATTTGGAAGAATCAAAAATTGAATTATTTGTTGGATTTTCTCCTGTT ACTCTTTGGGTGGACTTGTTAAGAGCTTTGGAGAGACTTTGGGGAAATGTAAAAGATTTAAAAAAAGTTTTTAATTCTGT ATTGGAAGAGATTTTTGATGAAGAATTAAAAAGAGAAGTTTGTCATTTGAATGAACAAATTGATTTCATATTGAAAGATT TGTCGGAGAATTTGAAAACAGGCGATACGCAGTATAACTATTCTCAAATTCCCTTATTACAAGAGGCGTTGAACAACCAA CTTGTTCGTTTTAGAGAAACAAAAAACACAAAAAAATACAGTCTTGATCGAGTGGAGACTTATTTTGTTTTTTTCTATAA TTTGAAATCGATTTTGGATGAATTGCAACAATTACAAATGATTATTCATCAAGGTGTTAACAAAAGCAACCATGATTAG
Upstream 100 bases:
>100_bases AAGGAAAAACAGGAAGCAAGTAAATAGGGAATTTTTATTTCAAATAATCTTCATATCATAGCGAAGCAAGCTTAACCTTT TTAAACTTTTGAGATAAATC
Downstream 100 bases:
>100_bases CTTCTCATGGCCTTATTAACATTAGGTTGAAAATCCAAAAATACTTTTAAACCAGGACTTCTTTTTCGGTTTAGCTTTAC CTTCCAAAACATCGATTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MQKIQNSWKTHLNQINFKLSFKISLAALTSLYVCHELDRYIKHPDIFTSGLWCVIASIFASLPTLGGTYKAIWNRFFGVL VGSAIGAFFASQWGAHPFVLGMAVFTTSIISFLCGLKESYRMACLSVAVIIIPWGMHPTLSPWAYAFYRFLDTCIGLGVA VFIAKAVWPSQAFTVMQKQMSDVLNQIRQAYEYIVVSADHLNKSDAILKSLLNDVDQTFNQIHVNLEESKIELFVGFSPV TLWVDLLRALERLWGNVKDLKKVFNSVLEEIFDEELKREVCHLNEQIDFILKDLSENLKTGDTQYNYSQIPLLQEALNNQ LVRFRETKNTKKYSLDRVETYFVFFYNLKSILDELQQLQMIIHQGVNKSNHD
Sequences:
>Translated_372_residues MQKIQNSWKTHLNQINFKLSFKISLAALTSLYVCHELDRYIKHPDIFTSGLWCVIASIFASLPTLGGTYKAIWNRFFGVL VGSAIGAFFASQWGAHPFVLGMAVFTTSIISFLCGLKESYRMACLSVAVIIIPWGMHPTLSPWAYAFYRFLDTCIGLGVA VFIAKAVWPSQAFTVMQKQMSDVLNQIRQAYEYIVVSADHLNKSDAILKSLLNDVDQTFNQIHVNLEESKIELFVGFSPV TLWVDLLRALERLWGNVKDLKKVFNSVLEEIFDEELKREVCHLNEQIDFILKDLSENLKTGDTQYNYSQIPLLQEALNNQ LVRFRETKNTKKYSLDRVETYFVFFYNLKSILDELQQLQMIIHQGVNKSNHD >Mature_372_residues MQKIQNSWKTHLNQINFKLSFKISLAALTSLYVCHELDRYIKHPDIFTSGLWCVIASIFASLPTLGGTYKAIWNRFFGVL VGSAIGAFFASQWGAHPFVLGMAVFTTSIISFLCGLKESYRMACLSVAVIIIPWGMHPTLSPWAYAFYRFLDTCIGLGVA VFIAKAVWPSQAFTVMQKQMSDVLNQIRQAYEYIVVSADHLNKSDAILKSLLNDVDQTFNQIHVNLEESKIELFVGFSPV TLWVDLLRALERLWGNVKDLKKVFNSVLEEIFDEELKREVCHLNEQIDFILKDLSENLKTGDTQYNYSQIPLLQEALNNQ LVRFRETKNTKKYSLDRVETYFVFFYNLKSILDELQQLQMIIHQGVNKSNHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42723; Mature: 42723
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKIQNSWKTHLNQINFKLSFKISLAALTSLYVCHELDRYIKHPDIFTSGLWCVIASIFA CCHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SLPTLGGTYKAIWNRFFGVLVGSAIGAFFASQWGAHPFVLGMAVFTTSIISFLCGLKESY HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH RMACLSVAVIIIPWGMHPTLSPWAYAFYRFLDTCIGLGVAVFIAKAVWPSQAFTVMQKQM HHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH SDVLNQIRQAYEYIVVSADHLNKSDAILKSLLNDVDQTFNQIHVNLEESKIELFVGFSPV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEECCHHH TLWVDLLRALERLWGNVKDLKKVFNSVLEEIFDEELKREVCHLNEQIDFILKDLSENLKT HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDTQYNYSQIPLLQEALNNQLVRFRETKNTKKYSLDRVETYFVFFYNLKSILDELQQLQM CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIHQGVNKSNHD HHHHCCCCCCCC >Mature Secondary Structure MQKIQNSWKTHLNQINFKLSFKISLAALTSLYVCHELDRYIKHPDIFTSGLWCVIASIFA CCHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SLPTLGGTYKAIWNRFFGVLVGSAIGAFFASQWGAHPFVLGMAVFTTSIISFLCGLKESY HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH RMACLSVAVIIIPWGMHPTLSPWAYAFYRFLDTCIGLGVAVFIAKAVWPSQAFTVMQKQM HHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH SDVLNQIRQAYEYIVVSADHLNKSDAILKSLLNDVDQTFNQIHVNLEESKIELFVGFSPV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEECCHHH TLWVDLLRALERLWGNVKDLKKVFNSVLEEIFDEELKREVCHLNEQIDFILKDLSENLKT HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDTQYNYSQIPLLQEALNNQLVRFRETKNTKKYSLDRVETYFVFFYNLKSILDELQQLQM CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIHQGVNKSNHD HHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA