Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446711

Identifier: 46446711

GI number: 46446711

Start: 1287830

End: 1288867

Strand: Reverse

Name: 46446711

Synonym: pc1077

Alternate gene names: NA

Gene position: 1288867-1287830 (Counterclockwise)

Preceding gene: 46446712

Following gene: 46446710

Centisome position: 53.38

GC content: 39.21

Gene sequence:

>1038_bases
ATGCGCAAAATCCTTTTGACAATTATGGCATCCCTTTTAAGTTGTTCTGCTGCTCAAGCATTTTGGCCTGAAGCAACAGA
TTCATCTTTAGAAGTTGGCTTTGGCTATCGTAGAGATGAACTTAAGTGGAAAACCCGTACTGGTCTCGACAGCTCAGATA
GTGGCTATTCGGCAGCATCACCATTTGGAGCTCAATCGACATTAAAATGGAAAAATTTAAATATCTGGCAAATCGAAGCT
AGAGGTGAGTATGTCACTTGTGACAATGTTTACTTGCGTGCTAGTGGAGATTACGGTTGGATCGTAAGTGGTAAGAATAG
AGATTCTGACTACATTAATGCAGGCGAAGAGTCTCAATTAGAAATTTCTCGCACGCATGCTAAAACAAGAGGTCATGTTT
ACGATGTAGACGTTGCTCTTGGATATCAATTTAAATTGTGTGACGATAGCTTTTCTGTTACACCAGTCGTTGGTTATTCT
TGGAAAGGCCAACACTTGAAAGATCGTCATTTAAGATTTGCAACTAGCCCTATAGGTGAAAGCAGCAGTAGCAGCGGCCT
TCTTCGTGCTTCTAGCGACTACTACGATTACAGCTCTTCTTCTTCTTCTTCTTCTAGTTCAAATTTCCATAACCGTTATA
ACACACGTTGGAATGGACCATTTGTTGGAGTTGATTTTGACTATCGTATTAGCTGTGATTTAGAATTGTTCTTAGATTAT
GAATTTCATTTTGCAAAATATCATGCAAAAGCTGATTGGAAATTACGTAATGATCTTCCAAATGGTTTTCACCACCGCTC
AAAAAGTTCTCAAGGTCATGTACTTGACTTTGGTGTGAAATGGGATTTGGATGAGTGCTGGACGCTTGCTTTAAAAGGTG
GAATTCAGTATTTCCATGCAAGACGTGGACATGATCGTTCTTTAGTTACTAAAACTGAAGTAGGTAATGTTGACACAAAA
TGTTTCGTATCAATCCCACTTAGAGATGTTAAGTGGTGCTCTGGTAGCGTTACATTTGATGTAGGAATGGCATTCTAA

Upstream 100 bases:

>100_bases
TTGTTAACGCACGTTTTAGTGTTGATTAATTCTAGAATTTATTGTTAAAGTGTATTTTTTTAAGATCCCTGAACCATTAA
AAATCATTAAGAGGACATAT

Downstream 100 bases:

>100_bases
TTTCTTTTTTCTCTTTGTTTCTGAGCCTCATTAAGTTTTCTTGATGAGGCTCTTTTTTTTATGCTCAAAATTTAGCAATT
TTTTTGAATTCAAAAAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MRKILLTIMASLLSCSAAQAFWPEATDSSLEVGFGYRRDELKWKTRTGLDSSDSGYSAASPFGAQSTLKWKNLNIWQIEA
RGEYVTCDNVYLRASGDYGWIVSGKNRDSDYINAGEESQLEISRTHAKTRGHVYDVDVALGYQFKLCDDSFSVTPVVGYS
WKGQHLKDRHLRFATSPIGESSSSSGLLRASSDYYDYSSSSSSSSSSNFHNRYNTRWNGPFVGVDFDYRISCDLELFLDY
EFHFAKYHAKADWKLRNDLPNGFHHRSKSSQGHVLDFGVKWDLDECWTLALKGGIQYFHARRGHDRSLVTKTEVGNVDTK
CFVSIPLRDVKWCSGSVTFDVGMAF

Sequences:

>Translated_345_residues
MRKILLTIMASLLSCSAAQAFWPEATDSSLEVGFGYRRDELKWKTRTGLDSSDSGYSAASPFGAQSTLKWKNLNIWQIEA
RGEYVTCDNVYLRASGDYGWIVSGKNRDSDYINAGEESQLEISRTHAKTRGHVYDVDVALGYQFKLCDDSFSVTPVVGYS
WKGQHLKDRHLRFATSPIGESSSSSGLLRASSDYYDYSSSSSSSSSSNFHNRYNTRWNGPFVGVDFDYRISCDLELFLDY
EFHFAKYHAKADWKLRNDLPNGFHHRSKSSQGHVLDFGVKWDLDECWTLALKGGIQYFHARRGHDRSLVTKTEVGNVDTK
CFVSIPLRDVKWCSGSVTFDVGMAF
>Mature_345_residues
MRKILLTIMASLLSCSAAQAFWPEATDSSLEVGFGYRRDELKWKTRTGLDSSDSGYSAASPFGAQSTLKWKNLNIWQIEA
RGEYVTCDNVYLRASGDYGWIVSGKNRDSDYINAGEESQLEISRTHAKTRGHVYDVDVALGYQFKLCDDSFSVTPVVGYS
WKGQHLKDRHLRFATSPIGESSSSSGLLRASSDYYDYSSSSSSSSSSNFHNRYNTRWNGPFVGVDFDYRISCDLELFLDY
EFHFAKYHAKADWKLRNDLPNGFHHRSKSSQGHVLDFGVKWDLDECWTLALKGGIQYFHARRGHDRSLVTKTEVGNVDTK
CFVSIPLRDVKWCSGSVTFDVGMAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39006; Mature: 39006

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKILLTIMASLLSCSAAQAFWPEATDSSLEVGFGYRRDELKWKTRTGLDSSDSGYSAAS
CHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCC
PFGAQSTLKWKNLNIWQIEARGEYVTCDNVYLRASGDYGWIVSGKNRDSDYINAGEESQL
CCCCCCEEEECCCCEEEEEECCCEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCEE
EISRTHAKTRGHVYDVDVALGYQFKLCDDSFSVTPVVGYSWKGQHLKDRHLRFATSPIGE
EEEEHHHCCCCEEEEEEEEECEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC
SSSSSGLLRASSDYYDYSSSSSSSSSSNFHNRYNTRWNGPFVGVDFDYRISCDLELFLDY
CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEEEEE
EFHFAKYHAKADWKLRNDLPNGFHHRSKSSQGHVLDFGVKWDLDECWTLALKGGIQYFHA
EEEEEEEECCCCEEEECCCCCCHHCCCCCCCCCEEEEEEEECHHHHHEEHHHCCHHEEHH
RRGHDRSLVTKTEVGNVDTKCFVSIPLRDVKWCSGSVTFDVGMAF
CCCCCCCEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEEECC
>Mature Secondary Structure
MRKILLTIMASLLSCSAAQAFWPEATDSSLEVGFGYRRDELKWKTRTGLDSSDSGYSAAS
CHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCC
PFGAQSTLKWKNLNIWQIEARGEYVTCDNVYLRASGDYGWIVSGKNRDSDYINAGEESQL
CCCCCCEEEECCCCEEEEEECCCEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCEE
EISRTHAKTRGHVYDVDVALGYQFKLCDDSFSVTPVVGYSWKGQHLKDRHLRFATSPIGE
EEEEHHHCCCCEEEEEEEEECEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC
SSSSSGLLRASSDYYDYSSSSSSSSSSNFHNRYNTRWNGPFVGVDFDYRISCDLELFLDY
CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEEEEE
EFHFAKYHAKADWKLRNDLPNGFHHRSKSSQGHVLDFGVKWDLDECWTLALKGGIQYFHA
EEEEEEEECCCCEEEECCCCCCHHCCCCCCCCCEEEEEEEECHHHHHEEHHHCCHHEEHH
RRGHDRSLVTKTEVGNVDTKCFVSIPLRDVKWCSGSVTFDVGMAF
CCCCCCCEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA