Click here to switch to the map view.

The map label for this gene is ygdD [C]

Identifier: 46446678

GI number: 46446678

Start: 1242751

End: 1243191

Strand: Reverse

Name: ygdD [C]

Synonym: pc1044

Alternate gene names: 46446678

Gene position: 1243191-1242751 (Counterclockwise)

Preceding gene: 46446679

Following gene: 46446677

Centisome position: 51.49

GC content: 33.11

Gene sequence:

>441_bases
ATGAAATCGTTAAAAGTAACAAAGTTAATTAATCTAGTTTATCTTTTTGAAAGTCATCACATGCAATTTCAACAACAGTT
ATTTTATCTTTTTGGATCTCTTTTTGGCATGTTGTCAATAGCTGCGGGTGCTTTCGGCTCACACCTACTCAAGTCAAGGT
TGACATCTGAATATTTAGGAGTTTTTGAAGTTGCCGTACGTTATCAAATGTACCATGCTTTAACGCTAATTCTAATCGCA
TTTTTGATGAAAAGTTCTCAATCATCTTGGTTACCAAAAGCTGGTTGGACATTTATTATCGGCGTGTTTTTGTTTTCAGG
TAGTTTATATACACTTGTATTAACTAATGTAAAACGATGGGGAATAATTACACCTATTGGTGGGGCAGCTTTGCTCATAG
GTTGGTTTTTTTTAATGTTATTTGGTTTTTTTGACAAATAA

Upstream 100 bases:

>100_bases
ATTGCTTCTTTATTTAATGATTCTGAGAAAGAACAAAGACGTTTTGAAGAATCTATCAAAAATTTAAGAAGTAAATGGGA
TAGTTACATGAAAAAAGTTC

Downstream 100 bases:

>100_bases
TTGATTAATATAGATTTATATATGCAACGGCATAGTGTTATTTTAAAGCCTGGTAAAGATAAAGCAATTAGGAATTATCA
TCATTGGATTTTTTCTGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MKSLKVTKLINLVYLFESHHMQFQQQLFYLFGSLFGMLSIAAGAFGSHLLKSRLTSEYLGVFEVAVRYQMYHALTLILIA
FLMKSSQSSWLPKAGWTFIIGVFLFSGSLYTLVLTNVKRWGIITPIGGAALLIGWFFLMLFGFFDK

Sequences:

>Translated_146_residues
MKSLKVTKLINLVYLFESHHMQFQQQLFYLFGSLFGMLSIAAGAFGSHLLKSRLTSEYLGVFEVAVRYQMYHALTLILIA
FLMKSSQSSWLPKAGWTFIIGVFLFSGSLYTLVLTNVKRWGIITPIGGAALLIGWFFLMLFGFFDK
>Mature_146_residues
MKSLKVTKLINLVYLFESHHMQFQQQLFYLFGSLFGMLSIAAGAFGSHLLKSRLTSEYLGVFEVAVRYQMYHALTLILIA
FLMKSSQSSWLPKAGWTFIIGVFLFSGSLYTLVLTNVKRWGIITPIGGAALLIGWFFLMLFGFFDK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=113, Percent_Identity=35.3982300884956, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 16595; Mature: 16595

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKVTKLINLVYLFESHHMQFQQQLFYLFGSLFGMLSIAAGAFGSHLLKSRLTSEYLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFEVAVRYQMYHALTLILIAFLMKSSQSSWLPKAGWTFIIGVFLFSGSLYTLVLTNVKRW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHC
GIITPIGGAALLIGWFFLMLFGFFDK
CCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLKVTKLINLVYLFESHHMQFQQQLFYLFGSLFGMLSIAAGAFGSHLLKSRLTSEYLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFEVAVRYQMYHALTLILIAFLMKSSQSSWLPKAGWTFIIGVFLFSGSLYTLVLTNVKRW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHC
GIITPIGGAALLIGWFFLMLFGFFDK
CCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA