| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446580
Identifier: 46446580
GI number: 46446580
Start: 1143489
End: 1144022
Strand: Reverse
Name: 46446580
Synonym: pc0946
Alternate gene names: NA
Gene position: 1144022-1143489 (Counterclockwise)
Preceding gene: 46446581
Following gene: 46446579
Centisome position: 47.38
GC content: 36.89
Gene sequence:
>534_bases ATGAAAAAAGTAGGGCTATTTTTTTTTCTATTTTTGTGTTTTTTCACAACATCATACAGCTTCGCACAAAATAACAAAGG TAACCTTGACAATAAGGTAGCACAGAGAGATAACAATTACCAAAGCCAAGGTGAACAAGCTTTTTATGGTGCAAATAATT CAGATGCTTGTGCACTTGCGGAAAGGCCAGTTGGTGATTGCTACTCTTTGTACTACAAATATGAACCATGCTACTACAAT AAATGGCACTGCAAATATGTTCCACAATTCATTCAAAAGAAACATTGCCGTATGGTTCCCCAGTACTATGAAAAAACATG CTGCAGATATATTCCACAATACTATTCTAAAATTTGCTGCCATCAAGTTCCTAAATACTACTATACAACAGATGGTCGCT ATGTTCCAAAATATACTTGTGAACGTTGCTACAAACATGTCCCAAAATATTACTACAAACATACAACCAGACCAGTTCGT GGAACTTATTGCGCGCCATCTGCCTGTGCTCTAAGACGTGAAGATGCACGTTAA
Upstream 100 bases:
>100_bases AAACCACGTGAAAATTTAATCTTTGAGATACGCACCAGTCCTTTACAAAGGGAATAATACCAAGTGCTTAAATCAATGAT AAACAACAAAAAGGTTTTTT
Downstream 100 bases:
>100_bases AAATTTAGCTTTTTTGACAGGTAGATGTTTTCTACCTGTCAATATCAATTTTAAAATAATTTATGACATATTTTATGCCA ATTTATCTCTATTACCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR GTYCAPSACALRREDAR
Sequences:
>Translated_177_residues MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR GTYCAPSACALRREDAR >Mature_177_residues MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALAERPVGDCYSLYYKYEPCYYN KWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICCHQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVR GTYCAPSACALRREDAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21238; Mature: 21238
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 7.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALA CCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHCCCCCHHCCCEEEECCCCCCCCHHC ERPVGDCYSLYYKYEPCYYNKWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICC CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH HQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVRGTYCAPSACALRREDAR HHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure MKKVGLFFFLFLCFFTTSYSFAQNNKGNLDNKVAQRDNNYQSQGEQAFYGANNSDACALA CCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHCCCCCHHCCCEEEECCCCCCCCHHC ERPVGDCYSLYYKYEPCYYNKWHCKYVPQFIQKKHCRMVPQYYEKTCCRYIPQYYSKICC CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH HQVPKYYYTTDGRYVPKYTCERCYKHVPKYYYKHTTRPVRGTYCAPSACALRREDAR HHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA