Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446496

Identifier: 46446496

GI number: 46446496

Start: 1042290

End: 1044116

Strand: Direct

Name: 46446496

Synonym: pc0862

Alternate gene names: NA

Gene position: 1042290-1044116 (Clockwise)

Preceding gene: 46446495

Following gene: 46446498

Centisome position: 43.17

GC content: 36.89

Gene sequence:

>1827_bases
ATGCTCACAAACGATTTATTTTATCTTCAAAAAGGGCATATTTACGCTGTTCCTATTATTCATTATAATATGGAAATGGC
TACGCAAGTTAAATGGGCTTTTGATACGCTTAAACCCGATTGCGTCGCTGTTGAATTACCTGAGACAATGCAAGTTAAAA
TGTTACACGCAGCTTCTCGATTACCAGACATTAGCGTTGTCTTAACCTATAACCAAGATCATGACCCTGTTTATTTTATG
GCAGAGCCATGCGACCCAATTTTTGAAGCGCTGCGAAGCTCAATGGAGCATCAAGTTCCCGCCTATTGTATCGATTTAGA
CGTTGATCACTACCCTGATATTCACGAACAAGTTCCCGATCCGTATGCAATTCAACGAATAGGTTTAAAAGCTTACTATA
ATCTTTATGAGCAAGCAAAAAAAGAAAATCGACAGCCATTTAATCATTTAGATCAGGAAAGAGAAATCTATATGGCTCGT
CGTTTAAAAGAACTATCTCTTAGATATGATCGTATTTTGTTTGTAGGGGGAATGGCGCATCTTTCTCAAGTGTTGAAATT
AGTGGATAATCGTTCTTTCCCGGAAGTTTATCATGCAGATCGAGGCATTATTGAACTTTGTACGCTTACGCCGGAATCTG
CAAGAGACATCTTATTTGAATGGGGGTATCTTTCTTATAAATATGAAACCATGAGAGAAAACTTTCTCGATGGAGAATTC
GTTGATCGGCAAAAAGTTATTTTGCAGCTTTATAAAGAGGCCTCTGAAAAATATGTGGAAAGCACAGGTAATTTTTTTGC
TGGTTATCACTTACGCAATATTATGAAGTTTGTGCGTAACTATGCATTAGTCGGAGGGCAGTTAATGCCTGATCTTTATA
AAATTTTATCTTCTGCTAAAGGGTGTGTTGACAATAACTATGCTTATGAAGTTTGGGAGTTAGCAACTTTTTATCCTTTT
CTTAAAAATATTGATAATCTTCCTGAATTAGATCTTTCTATTGAAGATGTTTGGGGTTATAGCAAACAAATTCGTTTTTA
TCTCAAAGAGAAAGGGCGAAAAAATTCTATTCCAAAAGTTCGTAAAGATCGGTCCTCTTTTCGTTTTACCCCACCGAATC
CTTTTAGTATTTGTTCATATCCTCCAGAAGATATTGCTATTGAAAAATTTGGTGATTTTTTGAAAAAGAAAGGTTGCCAA
ATTTTAGCTGAAGAAGGGGCTCGCACGATTCCTTTTTCTTCTAGTATTGAAGATGGAATAGATACCAAAGAAACAATTCG
TCATTGGCATGAAAGAAAATTATTTGTGAAAACAAAGGGAAAACCTCCAGCGGGAGTGGGCTCAATTTGTTTGATTTTTG
ATGAAGATAAGGCTGAAGAGGGTAAACCTTATCAAGAAAAATATCCTTGGCGAACGACATGGATTGGAGAACATCAACAA
GAGTCGGACATGTCTTTTTATGCAACCTCTCTTTCTCATCATGTTGTAGGGCCCGGAATAAGTCGCTGTGAGTATGGAGG
ATTTATGATGTCCTATCCTCCAAGAAGAATGCGCAATATTTGGTTTGACCCAGATTATTTTGATTGCCGTTTCAAATCGG
AAGTTCTTTTGATGGCTGCAATAGATTACGCGGTTAAGCCTATTATCGTCTATGTGGCGAGTACGCCACCTAGAAGCCAA
TTAAAAAGTTTTGCGCGTCGATTTGGTAAAAAAATTGTTTATATTCCGATCGGACAGCTTTCTCCAATCACACTTAATAA
ATTAAGAGCTTTTCATGTCCTTGACGGACATGACAAAAGAGAAATAGCGGATGAATATATTTATTAA

Upstream 100 bases:

>100_bases
AGCTTAAATGGTAATAGTGGGAATATTGAAAATTTATTGCGTGAGGCTATTTTAATGACTCTGGGAGATGAAGCTTTAAT
ATACGTGCTTTAGAGGTCTT

Downstream 100 bases:

>100_bases
TAACTCATTCATTTCTTTTTAAAACTTCTGAAAGCGTTGCTTCAATAGTTGCGAATAGTGTTTCTAAGCGATCTCTCGTA
GAAAAGGGTAATTTTAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 608; Mature: 608

Protein sequence:

>608_residues
MLTNDLFYLQKGHIYAVPIIHYNMEMATQVKWAFDTLKPDCVAVELPETMQVKMLHAASRLPDISVVLTYNQDHDPVYFM
AEPCDPIFEALRSSMEHQVPAYCIDLDVDHYPDIHEQVPDPYAIQRIGLKAYYNLYEQAKKENRQPFNHLDQEREIYMAR
RLKELSLRYDRILFVGGMAHLSQVLKLVDNRSFPEVYHADRGIIELCTLTPESARDILFEWGYLSYKYETMRENFLDGEF
VDRQKVILQLYKEASEKYVESTGNFFAGYHLRNIMKFVRNYALVGGQLMPDLYKILSSAKGCVDNNYAYEVWELATFYPF
LKNIDNLPELDLSIEDVWGYSKQIRFYLKEKGRKNSIPKVRKDRSSFRFTPPNPFSICSYPPEDIAIEKFGDFLKKKGCQ
ILAEEGARTIPFSSSIEDGIDTKETIRHWHERKLFVKTKGKPPAGVGSICLIFDEDKAEEGKPYQEKYPWRTTWIGEHQQ
ESDMSFYATSLSHHVVGPGISRCEYGGFMMSYPPRRMRNIWFDPDYFDCRFKSEVLLMAAIDYAVKPIIVYVASTPPRSQ
LKSFARRFGKKIVYIPIGQLSPITLNKLRAFHVLDGHDKREIADEYIY

Sequences:

>Translated_608_residues
MLTNDLFYLQKGHIYAVPIIHYNMEMATQVKWAFDTLKPDCVAVELPETMQVKMLHAASRLPDISVVLTYNQDHDPVYFM
AEPCDPIFEALRSSMEHQVPAYCIDLDVDHYPDIHEQVPDPYAIQRIGLKAYYNLYEQAKKENRQPFNHLDQEREIYMAR
RLKELSLRYDRILFVGGMAHLSQVLKLVDNRSFPEVYHADRGIIELCTLTPESARDILFEWGYLSYKYETMRENFLDGEF
VDRQKVILQLYKEASEKYVESTGNFFAGYHLRNIMKFVRNYALVGGQLMPDLYKILSSAKGCVDNNYAYEVWELATFYPF
LKNIDNLPELDLSIEDVWGYSKQIRFYLKEKGRKNSIPKVRKDRSSFRFTPPNPFSICSYPPEDIAIEKFGDFLKKKGCQ
ILAEEGARTIPFSSSIEDGIDTKETIRHWHERKLFVKTKGKPPAGVGSICLIFDEDKAEEGKPYQEKYPWRTTWIGEHQQ
ESDMSFYATSLSHHVVGPGISRCEYGGFMMSYPPRRMRNIWFDPDYFDCRFKSEVLLMAAIDYAVKPIIVYVASTPPRSQ
LKSFARRFGKKIVYIPIGQLSPITLNKLRAFHVLDGHDKREIADEYIY
>Mature_608_residues
MLTNDLFYLQKGHIYAVPIIHYNMEMATQVKWAFDTLKPDCVAVELPETMQVKMLHAASRLPDISVVLTYNQDHDPVYFM
AEPCDPIFEALRSSMEHQVPAYCIDLDVDHYPDIHEQVPDPYAIQRIGLKAYYNLYEQAKKENRQPFNHLDQEREIYMAR
RLKELSLRYDRILFVGGMAHLSQVLKLVDNRSFPEVYHADRGIIELCTLTPESARDILFEWGYLSYKYETMRENFLDGEF
VDRQKVILQLYKEASEKYVESTGNFFAGYHLRNIMKFVRNYALVGGQLMPDLYKILSSAKGCVDNNYAYEVWELATFYPF
LKNIDNLPELDLSIEDVWGYSKQIRFYLKEKGRKNSIPKVRKDRSSFRFTPPNPFSICSYPPEDIAIEKFGDFLKKKGCQ
ILAEEGARTIPFSSSIEDGIDTKETIRHWHERKLFVKTKGKPPAGVGSICLIFDEDKAEEGKPYQEKYPWRTTWIGEHQQ
ESDMSFYATSLSHHVVGPGISRCEYGGFMMSYPPRRMRNIWFDPDYFDCRFKSEVLLMAAIDYAVKPIIVYVASTPPRSQ
LKSFARRFGKKIVYIPIGQLSPITLNKLRAFHVLDGHDKREIADEYIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70947; Mature: 70947

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNDLFYLQKGHIYAVPIIHYNMEMATQVKWAFDTLKPDCVAVELPETMQVKMLHAASR
CCCCCEEEEECCCEEEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC
LPDISVVLTYNQDHDPVYFMAEPCDPIFEALRSSMEHQVPAYCIDLDVDHYPDIHEQVPD
CCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCC
PYAIQRIGLKAYYNLYEQAKKENRQPFNHLDQEREIYMARRLKELSLRYDRILFVGGMAH
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHHH
LSQVLKLVDNRSFPEVYHADRGIIELCTLTPESARDILFEWGYLSYKYETMRENFLDGEF
HHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCH
VDRQKVILQLYKEASEKYVESTGNFFAGYHLRNIMKFVRNYALVGGQLMPDLYKILSSAK
HHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GCVDNNYAYEVWELATFYPFLKNIDNLPELDLSIEDVWGYSKQIRFYLKEKGRKNSIPKV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCCCCHH
RKDRSSFRFTPPNPFSICSYPPEDIAIEKFGDFLKKKGCQILAEEGARTIPFSSSIEDGI
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCHHCCC
DTKETIRHWHERKLFVKTKGKPPAGVGSICLIFDEDKAEEGKPYQEKYPWRTTWIGEHQQ
CHHHHHHHHHHCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEEECCCCCC
ESDMSFYATSLSHHVVGPGISRCEYGGFMMSYPPRRMRNIWFDPDYFDCRFKSEVLLMAA
CCCHHHHHHHHHCCCCCCCCCHHCCCCEEECCCCHHHHCCCCCCCCCCCEECCCCHHHHH
IDYAVKPIIVYVASTPPRSQLKSFARRFGKKIVYIPIGQLSPITLNKLRAFHVLDGHDKR
HHHHHCEEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHEEEEEECCCCHH
EIADEYIY
HHHHHCCC
>Mature Secondary Structure
MLTNDLFYLQKGHIYAVPIIHYNMEMATQVKWAFDTLKPDCVAVELPETMQVKMLHAASR
CCCCCEEEEECCCEEEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC
LPDISVVLTYNQDHDPVYFMAEPCDPIFEALRSSMEHQVPAYCIDLDVDHYPDIHEQVPD
CCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCC
PYAIQRIGLKAYYNLYEQAKKENRQPFNHLDQEREIYMARRLKELSLRYDRILFVGGMAH
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHHH
LSQVLKLVDNRSFPEVYHADRGIIELCTLTPESARDILFEWGYLSYKYETMRENFLDGEF
HHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCH
VDRQKVILQLYKEASEKYVESTGNFFAGYHLRNIMKFVRNYALVGGQLMPDLYKILSSAK
HHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GCVDNNYAYEVWELATFYPFLKNIDNLPELDLSIEDVWGYSKQIRFYLKEKGRKNSIPKV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCCCCHH
RKDRSSFRFTPPNPFSICSYPPEDIAIEKFGDFLKKKGCQILAEEGARTIPFSSSIEDGI
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCHHCCC
DTKETIRHWHERKLFVKTKGKPPAGVGSICLIFDEDKAEEGKPYQEKYPWRTTWIGEHQQ
CHHHHHHHHHHCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEEECCCCCC
ESDMSFYATSLSHHVVGPGISRCEYGGFMMSYPPRRMRNIWFDPDYFDCRFKSEVLLMAA
CCCHHHHHHHHHCCCCCCCCCHHCCCCEEECCCCHHHHCCCCCCCCCCCEECCCCHHHHH
IDYAVKPIIVYVASTPPRSQLKSFARRFGKKIVYIPIGQLSPITLNKLRAFHVLDGHDKR
HHHHHCEEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHEEEEEECCCCHH
EIADEYIY
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA