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The map label for this gene is yqgF [C]

Identifier: 46446457

GI number: 46446457

Start: 1008251

End: 1008655

Strand: Reverse

Name: yqgF [C]

Synonym: pc0823

Alternate gene names: 46446457

Gene position: 1008655-1008251 (Counterclockwise)

Preceding gene: 46446458

Following gene: 46446455

Centisome position: 41.78

GC content: 37.28

Gene sequence:

>405_bases
ATGAGCCGAATAGGCTTGGCTCAATCCGACGAAAGAAAGATTATAGCCATGCCTCTTATCACTGTACATACTGAAAAAAA
ATCAGAACAAACAGTTATCAAATTATTAGAAACCATTTCACAGTTGTGCGAAACTCAAAAATGTGAAATTGAAGAAATTG
TGATCGGGCTTCCTTTAATGATGAGTGGTAGAACTGGATTTTTAGCAGATGAAGTTAAACATTTTGCTCAACTTCTTCAA
CAATTGACACCCATTCCTATTCGTTTATGGGATGAACGTTTAACTACGGTACAAGCCGAACGCTCTTTGCGAGAAAGTCA
ATTAACACGTAAAAAGCGATCAAAAGTTGTTGATATTGTCAGCGCTTCCATCATCCTTCAAAGCTATCTAGATAGTCGAT
GCTGA

Upstream 100 bases:

>100_bases
CCACTTTTCCGTGACTTTATTCAAGCGATGATTATTTACCATAAGAGTCAGCATGGAAAATAAGCCAAAGCCCAGTAGAA
TTTTAGGCATCGATTTTGGG

Downstream 100 bases:

>100_bases
ATAGTTGATTCAGCATCGACTAGATATTTATAATTCTCCTTCAAGAACTTCTAATTGAAGCTTTAAAACTTCTTCTAAAT
TGGTCTGTTCAGCACTTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQLLQ
QLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVSASIILQSYLDSRC

Sequences:

>Translated_134_residues
MSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQLLQ
QLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVSASIILQSYLDSRC
>Mature_133_residues
SRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQLLQQ
LTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVSASIILQSYLDSRC

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PARUW (Q6MD02)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_007822.1
- ProteinModelPortal:   Q6MD02
- SMR:   Q6MD02
- STRING:   Q6MD02
- GeneID:   2781070
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc0823
- NMPDR:   fig|264201.1.peg.823
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   GRSVIDQ
- PhylomeDB:   Q6MD02
- ProtClustDB:   CLSK2762270
- BioCyc:   CPRO264201:PC0823-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15292; Mature: 15161

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLM
CCCCCCCCCCCCEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCE
MSGRTGFLADEVKHFAQLLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIV
ECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASIILQSYLDSRC
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLM
CCCCCCCCCCCEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCE
MSGRTGFLADEVKHFAQLLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIV
ECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASIILQSYLDSRC
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA