Click here to switch to the map view.

The map label for this gene is scc1

Identifier: 46446380

GI number: 46446380

Start: 922288

End: 922746

Strand: Reverse

Name: scc1

Synonym: pc0746

Alternate gene names: NA

Gene position: 922746-922288 (Counterclockwise)

Preceding gene: 46446381

Following gene: 46446379

Centisome position: 38.22

GC content: 33.99

Gene sequence:

>459_bases
ATGGTTAGTAGCCAGTTTGAATCCATTTTGAAAGAATTCGAACTTTTTTTCAATTGTTCATTAAAAGCAGATGAAAATGA
ATCTTGTCTGATTCAAATGGGAATTGGAGTAAATATCCAAATTGAACTTAATCGAGAAGGAAAGTTATTAATTGGCTGCC
GTATAGCCACACTTCCATTAGGGAGATTCCTTCATGAAGTAGTCAAAGAAGCTTTAAAAGCGAATGATTTTTATCCCCCT
TCGAGCGGAATTTTTGGCTTTAGCCATAAATCCAGTAATTTAATTTTATATACTTTAATTGATCCTTATCAGTTAGACCA
AAACAAAATTGAAAGCATTCTTTCACCTTTTGTTGCCAAAGCGAAAATTTGGTCCGATGCTCTCAATCAAGGAAATGTTC
CGTATATTACAGAAATTACCAATACTCCTCCTGCACCTCCATTTGGTTATCAAAGATGA

Upstream 100 bases:

>100_bases
GAAGCCTTAGAAGACCTTGAAGATGAATTAGAAGAATTAGAAGAGCAAGCATTAGAAGCTGAAGAAAGCGTTGATAAAGA
AAGTTGAGGAGCTTTATCCT

Downstream 100 bases:

>100_bases
TAGATCCTACTTTCTTACTTCATTCTCTTGCGGCTAAACAGTGGGAGCGAATCGGTATCAAGCACCATCATGGAATCAAT
GTTCCTTTATTTAGTGTTCA

Product: type III secretion chaperone sycE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MVSSQFESILKEFELFFNCSLKADENESCLIQMGIGVNIQIELNREGKLLIGCRIATLPLGRFLHEVVKEALKANDFYPP
SSGIFGFSHKSSNLILYTLIDPYQLDQNKIESILSPFVAKAKIWSDALNQGNVPYITEITNTPPAPPFGYQR

Sequences:

>Translated_152_residues
MVSSQFESILKEFELFFNCSLKADENESCLIQMGIGVNIQIELNREGKLLIGCRIATLPLGRFLHEVVKEALKANDFYPP
SSGIFGFSHKSSNLILYTLIDPYQLDQNKIESILSPFVAKAKIWSDALNQGNVPYITEITNTPPAPPFGYQR
>Mature_152_residues
MVSSQFESILKEFELFFNCSLKADENESCLIQMGIGVNIQIELNREGKLLIGCRIATLPLGRFLHEVVKEALKANDFYPP
SSGIFGFSHKSSNLILYTLIDPYQLDQNKIESILSPFVAKAKIWSDALNQGNVPYITEITNTPPAPPFGYQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17057; Mature: 17057

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSSQFESILKEFELFFNCSLKADENESCLIQMGIGVNIQIELNREGKLLIGCRIATLPL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEEECCCH
GRFLHEVVKEALKANDFYPPSSGIFGFSHKSSNLILYTLIDPYQLDQNKIESILSPFVAK
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEEECCCEECCHHHHHHHHHHHHHH
AKIWSDALNQGNVPYITEITNTPPAPPFGYQR
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MVSSQFESILKEFELFFNCSLKADENESCLIQMGIGVNIQIELNREGKLLIGCRIATLPL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEEECCCH
GRFLHEVVKEALKANDFYPPSSGIFGFSHKSSNLILYTLIDPYQLDQNKIESILSPFVAK
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEEECCCEECCHHHHHHHHHHHHHH
AKIWSDALNQGNVPYITEITNTPPAPPFGYQR
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA