| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446363
Identifier: 46446363
GI number: 46446363
Start: 886649
End: 889396
Strand: Reverse
Name: 46446363
Synonym: pc0729
Alternate gene names: NA
Gene position: 889396-886649 (Counterclockwise)
Preceding gene: 46446367
Following gene: 46446362
Centisome position: 36.84
GC content: 32.13
Gene sequence:
>2748_bases ATGCTGCTTCCCTGTAACATAGTTACTAACATAAATTCTACGATTTTTGTAGATAACGAACAAAATCCTTTATTTCCTTC TCCTTTAGCTATAAAAATTGGGTTAGAAATCTTCAAATATTTGGAATCGCTAGATCGAGGGCAAGCTAGGCTAGTGTGTA GGACATGGAAGCAGCTGATTAATAAAGTAGATATTATTGAAAACTATAATATAAGTCTTAAGAGTTCGGCTGGGGTAAGA CAAGAAGCTACGCATTATTTGCAAAACCCTGAAAAATTAAAAGCCGAGCAGCGCTTTCTTTTAACAATTATTAGGCTCTC GAAAGATTGCATAAAAATAAAGGTCGCAGCTGCAAATGCCTTGATGATTTTAAAAAAAACCAATTTTTCTTTTATTGGCT CTGATTTTAGAGGAATTCAAGCCCCTGGTGTTAGGCTTACCCGGGCAATTTTGGATAAAGCTAATTTCTCAGGAGCGAAT CTAGAAGGAGCGGATTTTACCGCTTGCTCCTTGGAGGACGCTATACTTGATGGCGCGGAGCTTAAAGACGTCCAGTTTGG GCAACTCCCTTATTTAAACCATCAAAAAAATGTACTCGCTATGGCTGTGTCTCCTAATGGCAAGCATTTGGCTTCCGTTG ATCAAAATAATTTCTATGTCTGGAACCTGGAAACTTTTGAAGTTGAAAAGCAACTATTGGAAATAGAAAGTCCTCAGCAA AATTTTCTCCAGTTTTTTCAAAATGGTCAATTTCTCTTTAAAGCAACTAGTAGGAAAGGAGGGAAAACACCACACAAAGC AAGGATTGAAATATGGAAAATCACACCCTTAGAAATGATTAGCCAATCGATTATCGGAGATAATGACTCTTTTTTGTTAT TGGCCCTTACTCAAGATGAAAAAACACTTATTAGTGTAGCCGTAAAAGATGATGAAGAATTTTCTAATGGGAAAACAGAA ATTTGCCTTTGGCAAATAGACTTTAGTGAACAAAATCTTCCCCAACTTACGCTAGTTAGAAAAAAAATAACAAAAGGTTT AGCACAGGAGTGTAGCTATGCTCCCAAAACCTCTATTATTGCCCTATATGTTTTAGAGAAAAGCTGTATCGAATTTTATT CTCTTCCTGACTTAGAAATTAAGCAGGAAAAGACATTAAGGCGGCTATTAGGAGAAAAGGGAAAATTCATAAGCAATATG ATATTTACTCCCCAAGAGAACCAGCTTATTATAAATATCCTTACTGGAATTGATAAAATTGATAGTAAAGTTAAAAGCAA AGTATATTTTTGGAATATAAAAAATAAGCAAAAAAAATTTTTGTTTTTTGAAGAACATCCTATAAAAAATCTCCATTTTT TGCCAGATAGCTCACAAATTGCCTACTTTACAGTTTACAACCATAATGCAACCTTTTTTCACATTCGCGACAAAAATTTT AAACTAAAGTTTAGAGAACGATTTAACTCAAATGATATACTTGGAAGTAAAATTTTAGGTTTTATTTCCAATAGTCAATT TATCTTCCGACCTAAAATCAAACAAATTTCTATTACCCCCTTAAAAACTTTTGTGGGTAAAAAAGAATTACCTCTGTCTA TTCACGATATGTATTTTTTTACAAATGAACAAACAATCTCTGCTTGGCATTATGCTTATGATTTACATTATTCCTCAGAA GACTTCTTTTTTAAAATTATTGAAAATAAACTATATAGTTACCAAATTTTTAATGGGAAAAATCTTGGGTATAAAAACTT ACCTATACATTTTTCTAAACCAATTTTGAATTGGAATTGTCAGCTTTCTTCTGATGCTCAATACTGTATTCGAACGTATC CTTCTAAAAGCAATGGCGAAAACAAAATTACTATTTCCCAAGTTGAAAATGAAGAAATACAGGCTTCATATACAGGATCT TTTTTAAGTTATTTTTTATCAAAAAATAATCGTTACCTCGTCTTTATTTATCAAAACCAACTTAAATTAATTGAAATAGA TTTCAAAAAATACGATCAATTAGTAGACGTCGATTCCACAGAACAAAAACCTACTGTTTTTTGTCCCTTTCTTTTGAGCA AAGAAAAAATTGAACATACTTTTTCTGATCCTTTATTTCCCATCACAACTCTTGCCTTAAGAAGTGTTGAAACAGGACAA ATTAGCTTATGGGAGATTAATTGGGAAACTCAACAAATACAAGAGCTAATTCAGTGGTCAACGGAATTACCCTCCACTAA TTTTAACTGGTTAGGTCAATCGAAGTTCTATTTTCAACAATCGAACTTCTATTTTAAAAAGAATAAACAAACCCTTGGTA TATGGAACAAAAAAACGCGTAGAAAGCAAACCATTAAGTTTAAAAATAAGTTAATTGATTTTGTTATATCCCAGAATGGC CTTTGGATGGTGACTATTGAAAAACTAGTAAGTTCGATGAACGAAAGCGTTTTTTCCAAAAATAAATCCAAGTTTTGCTT ATGGAATTTAGATCAGAAGAAAAAGCTTGATCAGTTCATTCTTCCTTTTGGTCAATCAATGATCCAACTTTCACCAGATG GTAAGTTTTTGATTGTTAATCATAGGATTGATTTTGCAGAATTAAGTGTACGGAAAGTAAAGAAAGGAAAGTTTCATCTT TTATGGAAAACTCCCCATTATTTAAACGTAAAAAAATTGAGTTTGAAGAATACACAAAACTTGGATAAAATAAACGCTTT ATTGCTTTCTCAATTACAAAATGAATAA
Upstream 100 bases:
>100_bases AATCAAATAAAAAATGAATTGTCTTATTTTGGTATAGTTTATCACCCTCACAATAGTTAAATAGAACTTTTTCTCATCCT CTTTTTAGGAGAATTATACG
Downstream 100 bases:
>100_bases GTATTTGATGAAAATAGGTAGTGCTAAATAAGTAAGGCTATTTTAATAAACTAATTTAATTGAATAGATTAATTGTCCTA ATTCAAGTGAAGAAAAGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 915; Mature: 915
Protein sequence:
>915_residues MLLPCNIVTNINSTIFVDNEQNPLFPSPLAIKIGLEIFKYLESLDRGQARLVCRTWKQLINKVDIIENYNISLKSSAGVR QEATHYLQNPEKLKAEQRFLLTIIRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAPGVRLTRAILDKANFSGAN LEGADFTACSLEDAILDGAELKDVQFGQLPYLNHQKNVLAMAVSPNGKHLASVDQNNFYVWNLETFEVEKQLLEIESPQQ NFLQFFQNGQFLFKATSRKGGKTPHKARIEIWKITPLEMISQSIIGDNDSFLLLALTQDEKTLISVAVKDDEEFSNGKTE ICLWQIDFSEQNLPQLTLVRKKITKGLAQECSYAPKTSIIALYVLEKSCIEFYSLPDLEIKQEKTLRRLLGEKGKFISNM IFTPQENQLIINILTGIDKIDSKVKSKVYFWNIKNKQKKFLFFEEHPIKNLHFLPDSSQIAYFTVYNHNATFFHIRDKNF KLKFRERFNSNDILGSKILGFISNSQFIFRPKIKQISITPLKTFVGKKELPLSIHDMYFFTNEQTISAWHYAYDLHYSSE DFFFKIIENKLYSYQIFNGKNLGYKNLPIHFSKPILNWNCQLSSDAQYCIRTYPSKSNGENKITISQVENEEIQASYTGS FLSYFLSKNNRYLVFIYQNQLKLIEIDFKKYDQLVDVDSTEQKPTVFCPFLLSKEKIEHTFSDPLFPITTLALRSVETGQ ISLWEINWETQQIQELIQWSTELPSTNFNWLGQSKFYFQQSNFYFKKNKQTLGIWNKKTRRKQTIKFKNKLIDFVISQNG LWMVTIEKLVSSMNESVFSKNKSKFCLWNLDQKKKLDQFILPFGQSMIQLSPDGKFLIVNHRIDFAELSVRKVKKGKFHL LWKTPHYLNVKKLSLKNTQNLDKINALLLSQLQNE
Sequences:
>Translated_915_residues MLLPCNIVTNINSTIFVDNEQNPLFPSPLAIKIGLEIFKYLESLDRGQARLVCRTWKQLINKVDIIENYNISLKSSAGVR QEATHYLQNPEKLKAEQRFLLTIIRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAPGVRLTRAILDKANFSGAN LEGADFTACSLEDAILDGAELKDVQFGQLPYLNHQKNVLAMAVSPNGKHLASVDQNNFYVWNLETFEVEKQLLEIESPQQ NFLQFFQNGQFLFKATSRKGGKTPHKARIEIWKITPLEMISQSIIGDNDSFLLLALTQDEKTLISVAVKDDEEFSNGKTE ICLWQIDFSEQNLPQLTLVRKKITKGLAQECSYAPKTSIIALYVLEKSCIEFYSLPDLEIKQEKTLRRLLGEKGKFISNM IFTPQENQLIINILTGIDKIDSKVKSKVYFWNIKNKQKKFLFFEEHPIKNLHFLPDSSQIAYFTVYNHNATFFHIRDKNF KLKFRERFNSNDILGSKILGFISNSQFIFRPKIKQISITPLKTFVGKKELPLSIHDMYFFTNEQTISAWHYAYDLHYSSE DFFFKIIENKLYSYQIFNGKNLGYKNLPIHFSKPILNWNCQLSSDAQYCIRTYPSKSNGENKITISQVENEEIQASYTGS FLSYFLSKNNRYLVFIYQNQLKLIEIDFKKYDQLVDVDSTEQKPTVFCPFLLSKEKIEHTFSDPLFPITTLALRSVETGQ ISLWEINWETQQIQELIQWSTELPSTNFNWLGQSKFYFQQSNFYFKKNKQTLGIWNKKTRRKQTIKFKNKLIDFVISQNG LWMVTIEKLVSSMNESVFSKNKSKFCLWNLDQKKKLDQFILPFGQSMIQLSPDGKFLIVNHRIDFAELSVRKVKKGKFHL LWKTPHYLNVKKLSLKNTQNLDKINALLLSQLQNE >Mature_915_residues MLLPCNIVTNINSTIFVDNEQNPLFPSPLAIKIGLEIFKYLESLDRGQARLVCRTWKQLINKVDIIENYNISLKSSAGVR QEATHYLQNPEKLKAEQRFLLTIIRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAPGVRLTRAILDKANFSGAN LEGADFTACSLEDAILDGAELKDVQFGQLPYLNHQKNVLAMAVSPNGKHLASVDQNNFYVWNLETFEVEKQLLEIESPQQ NFLQFFQNGQFLFKATSRKGGKTPHKARIEIWKITPLEMISQSIIGDNDSFLLLALTQDEKTLISVAVKDDEEFSNGKTE ICLWQIDFSEQNLPQLTLVRKKITKGLAQECSYAPKTSIIALYVLEKSCIEFYSLPDLEIKQEKTLRRLLGEKGKFISNM IFTPQENQLIINILTGIDKIDSKVKSKVYFWNIKNKQKKFLFFEEHPIKNLHFLPDSSQIAYFTVYNHNATFFHIRDKNF KLKFRERFNSNDILGSKILGFISNSQFIFRPKIKQISITPLKTFVGKKELPLSIHDMYFFTNEQTISAWHYAYDLHYSSE DFFFKIIENKLYSYQIFNGKNLGYKNLPIHFSKPILNWNCQLSSDAQYCIRTYPSKSNGENKITISQVENEEIQASYTGS FLSYFLSKNNRYLVFIYQNQLKLIEIDFKKYDQLVDVDSTEQKPTVFCPFLLSKEKIEHTFSDPLFPITTLALRSVETGQ ISLWEINWETQQIQELIQWSTELPSTNFNWLGQSKFYFQQSNFYFKKNKQTLGIWNKKTRRKQTIKFKNKLIDFVISQNG LWMVTIEKLVSSMNESVFSKNKSKFCLWNLDQKKKLDQFILPFGQSMIQLSPDGKFLIVNHRIDFAELSVRKVKKGKFHL LWKTPHYLNVKKLSLKNTQNLDKINALLLSQLQNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 106314; Mature: 106314
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLPCNIVTNINSTIFVDNEQNPLFPSPLAIKIGLEIFKYLESLDRGQARLVCRTWKQLI CEECCEEEECCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHH NKVDIIENYNISLKSSAGVRQEATHYLQNPEKLKAEQRFLLTIIRLSKDCIKIKVAAANA HHHHHEECCCEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCE LMILKKTNFSFIGSDFRGIQAPGVRLTRAILDKANFSGANLEGADFTACSLEDAILDGAE EEEEEECCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHCCCCC LKDVQFGQLPYLNHQKNVLAMAVSPNGKHLASVDQNNFYVWNLETFEVEKQLLEIESPQQ CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCHH NFLQFFQNGQFLFKATSRKGGKTPHKARIEIWKITPLEMISQSIIGDNDSFLLLALTQDE HHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCEEEEEEECCC KTLISVAVKDDEEFSNGKTEICLWQIDFSEQNLPQLTLVRKKITKGLAQECSYAPKTSII CEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE ALYVLEKSCIEFYSLPDLEIKQEKTLRRLLGEKGKFISNMIFTPQENQLIINILTGIDKI EEEEEHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHEEECCCCCCEEEEEECCCHHH DSKVKSKVYFWNIKNKQKKFLFFEEHPIKNLHFLPDSSQIAYFTVYNHNATFFHIRDKNF HHHHHCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCCEEEEEEEECCEEEEEEECCCE KLKFRERFNSNDILGSKILGFISNSQFIFRPKIKQISITPLKTFVGKKELPLSIHDMYFF EEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCEEEECHHHHHCCCCCCCEEEEEEEEE TNEQTISAWHYAYDLHYSSEDFFFKIIENKLYSYQIFNGKNLGYKNLPIHFSKPILNWNC ECCCEEEEEEEEEEEEECCCHHHHHEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEE QLSSDAQYCIRTYPSKSNGENKITISQVENEEIQASYTGSFLSYFLSKNNRYLVFIYQNQ EECCCCCHHHCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECC LKLIEIDFKKYDQLVDVDSTEQKPTVFCPFLLSKEKIEHTFSDPLFPITTLALRSVETGQ EEEEEEEHHHHHHEECCCCCCCCCEEEEHHHHCHHHHHHHHCCCCHHHHHHHHHCCCCCE ISLWEINWETQQIQELIQWSTELPSTNFNWLGQSKFYFQQSNFYFKKNKQTLGIWNKKTR EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEECCCEEEECCCCHH RKQTIKFKNKLIDFVISQNGLWMVTIEKLVSSMNESVFSKNKSKFCLWNLDQKKKLDQFI HHHHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH LPFGQSMIQLSPDGKFLIVNHRIDFAELSVRKVKKGKFHLLWKTPHYLNVKKLSLKNTQN HCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCC LDKINALLLSQLQNE HHHHHHHHHHHHHCC >Mature Secondary Structure MLLPCNIVTNINSTIFVDNEQNPLFPSPLAIKIGLEIFKYLESLDRGQARLVCRTWKQLI CEECCEEEECCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHH NKVDIIENYNISLKSSAGVRQEATHYLQNPEKLKAEQRFLLTIIRLSKDCIKIKVAAANA HHHHHEECCCEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCE LMILKKTNFSFIGSDFRGIQAPGVRLTRAILDKANFSGANLEGADFTACSLEDAILDGAE EEEEEECCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHCCCCC LKDVQFGQLPYLNHQKNVLAMAVSPNGKHLASVDQNNFYVWNLETFEVEKQLLEIESPQQ CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCHH NFLQFFQNGQFLFKATSRKGGKTPHKARIEIWKITPLEMISQSIIGDNDSFLLLALTQDE HHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCEEEEEEECCC KTLISVAVKDDEEFSNGKTEICLWQIDFSEQNLPQLTLVRKKITKGLAQECSYAPKTSII CEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE ALYVLEKSCIEFYSLPDLEIKQEKTLRRLLGEKGKFISNMIFTPQENQLIINILTGIDKI EEEEEHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHEEECCCCCCEEEEEECCCHHH DSKVKSKVYFWNIKNKQKKFLFFEEHPIKNLHFLPDSSQIAYFTVYNHNATFFHIRDKNF HHHHHCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCCEEEEEEEECCEEEEEEECCCE KLKFRERFNSNDILGSKILGFISNSQFIFRPKIKQISITPLKTFVGKKELPLSIHDMYFF EEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCEEEECHHHHHCCCCCCCEEEEEEEEE TNEQTISAWHYAYDLHYSSEDFFFKIIENKLYSYQIFNGKNLGYKNLPIHFSKPILNWNC ECCCEEEEEEEEEEEEECCCHHHHHEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEE QLSSDAQYCIRTYPSKSNGENKITISQVENEEIQASYTGSFLSYFLSKNNRYLVFIYQNQ EECCCCCHHHCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECC LKLIEIDFKKYDQLVDVDSTEQKPTVFCPFLLSKEKIEHTFSDPLFPITTLALRSVETGQ EEEEEEEHHHHHHEECCCCCCCCCEEEEHHHHCHHHHHHHHCCCCHHHHHHHHHCCCCCE ISLWEINWETQQIQELIQWSTELPSTNFNWLGQSKFYFQQSNFYFKKNKQTLGIWNKKTR EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEECCCEEEECCCCHH RKQTIKFKNKLIDFVISQNGLWMVTIEKLVSSMNESVFSKNKSKFCLWNLDQKKKLDQFI HHHHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH LPFGQSMIQLSPDGKFLIVNHRIDFAELSVRKVKKGKFHLLWKTPHYLNVKKLSLKNTQN HCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCC LDKINALLLSQLQNE HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA