| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is yhgN [H]
Identifier: 46446318
GI number: 46446318
Start: 831979
End: 832575
Strand: Reverse
Name: yhgN [H]
Synonym: pc0684
Alternate gene names: 46446318
Gene position: 832575-831979 (Counterclockwise)
Preceding gene: 46446319
Following gene: 46446317
Centisome position: 34.48
GC content: 36.52
Gene sequence:
>597_bases GTGTCTGTTATTCAACTTGCGATGATTTTTTTTATTGTCACTAATCCTATCGGCAACTGCCCTACCATTATTACCCTTAT TAAAGACTATTCAATTAAGCAACAGCAAAAGATCTTATTTCGTGAATCGATATTTTCGATGATTTTAGCGATTCTTTTTC TATTTTTAGGCGAGATATTCCTTACAAGTTTTCAAATTCAAAACTATGCTTTGACAATTAGCGGAGGCATTCTTCTTTTC ATTGTCGCCCTTAAAATGATTTTTTCTGATCGTTTGAAAACGAAAACGGATACACCCAAACAAGCCCCATTTATTGTTCC TATCGCCACCCCTCTTTTATCAGGTGCTGGACTCCTTACAATGATCATGCTTTATTCCAAAGAAGAAGCTAACGACTTAA AAATGTTATGTGCCATTTTGCTAGCATGGGTTGGAATTACTACCGTCTTAGTCACAGCCCCTTATTTACAAATATTTCTC GGTAAACGTGGTCTAGCAGCCTTAGAACAATTAACGGGGATGTTACTTGCCATGATCGCCATTCAAATGATCGTTCAAGG ATCTGGTTTGTTTTTAACTCTTCTATTCGCTGTTTAA
Upstream 100 bases:
>100_bases CTCTCACTCACATCCTTTCGCTCTGGGTAATAATCCTTGCTCTAAAACCTCACCAATGTTATGTTATTTTTCCAATATGA TTCTCAGGTGAAGGTTAATC
Downstream 100 bases:
>100_bases ACTTTGAGAAGCCCTTTCCAGGAGTATGAGAATGAATATCTTTAACATTGCACTTGTTCTTTTTTTTATCATGGACCCTA TTGGGAATATTTCTTCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSVIQLAMIFFIVTNPIGNCPTIITLIKDYSIKQQQKILFRESIFSMILAILFLFLGEIFLTSFQIQNYALTISGGILLF IVALKMIFSDRLKTKTDTPKQAPFIVPIATPLLSGAGLLTMIMLYSKEEANDLKMLCAILLAWVGITTVLVTAPYLQIFL GKRGLAALEQLTGMLLAMIAIQMIVQGSGLFLTLLFAV
Sequences:
>Translated_198_residues MSVIQLAMIFFIVTNPIGNCPTIITLIKDYSIKQQQKILFRESIFSMILAILFLFLGEIFLTSFQIQNYALTISGGILLF IVALKMIFSDRLKTKTDTPKQAPFIVPIATPLLSGAGLLTMIMLYSKEEANDLKMLCAILLAWVGITTVLVTAPYLQIFL GKRGLAALEQLTGMLLAMIAIQMIVQGSGLFLTLLFAV >Mature_197_residues SVIQLAMIFFIVTNPIGNCPTIITLIKDYSIKQQQKILFRESIFSMILAILFLFLGEIFLTSFQIQNYALTISGGILLFI VALKMIFSDRLKTKTDTPKQAPFIVPIATPLLSGAGLLTMIMLYSKEEANDLKMLCAILLAWVGITTVLVTAPYLQIFLG KRGLAALEQLTGMLLAMIAIQMIVQGSGLFLTLLFAV
Specific function: Unknown
COG id: COG2095
COG function: function code U; Multiple antibiotic transporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0056 (marC) family [H]
Homologues:
Organism=Escherichia coli, GI1789842, Length=188, Percent_Identity=35.1063829787234, Blast_Score=124, Evalue=3e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002771 [H]
Pfam domain/function: PF01914 MarC [H]
EC number: NA
Molecular weight: Translated: 21842; Mature: 21711
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIQLAMIFFIVTNPIGNCPTIITLIKDYSIKQQQKILFRESIFSMILAILFLFLGEIF CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSFQIQNYALTISGGILLFIVALKMIFSDRLKTKTDTPKQAPFIVPIATPLLSGAGLLT HHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCCCHHHH MIMLYSKEEANDLKMLCAILLAWVGITTVLVTAPYLQIFLGKRGLAALEQLTGMLLAMIA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IQMIVQGSGLFLTLLFAV HHHHHCCCCHHHHHHHHC >Mature Secondary Structure SVIQLAMIFFIVTNPIGNCPTIITLIKDYSIKQQQKILFRESIFSMILAILFLFLGEIF HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSFQIQNYALTISGGILLFIVALKMIFSDRLKTKTDTPKQAPFIVPIATPLLSGAGLLT HHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCCCHHHH MIMLYSKEEANDLKMLCAILLAWVGITTVLVTAPYLQIFLGKRGLAALEQLTGMLLAMIA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IQMIVQGSGLFLTLLFAV HHHHHCCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]