| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ypwA [H]
Identifier: 46446264
GI number: 46446264
Start: 769488
End: 771008
Strand: Reverse
Name: ypwA [H]
Synonym: pc0630
Alternate gene names: 46446264
Gene position: 771008-769488 (Counterclockwise)
Preceding gene: 46446265
Following gene: 46446262
Centisome position: 31.93
GC content: 37.02
Gene sequence:
>1521_bases ATGAGTAAAACTCAAAAAGAGTATCAAAAACTACATGTACTTAGTAAACATGCACGCATTCTACAAGGTATTTCTTCTCA TTTAGATTGGGACCAAGAAACCTATATGCCTTTTGGTAGCGCAGCTATTCGCGCAGAGCAACTTAAAACAATGGCAGGTT TAATTCATCGAGAAAAAACAAGTCAAAAATTCGCAAATACCCTTTCTAAACTTATCGATCTTTCTAGCGGCGAATTGATT GCACAAGACCTCACGCCTGCGCAATCCTCTGCTGTTAAAGAATGGCGTCGAGATTATTTGCAAGATACTGCCATGCCAGC AGAATTCGTTGAAGAGTTTGCTCAATTAACTTCTCAATCTGTTTTGGCTTGGCGCAACGCAAAAAAATCAAATTCCTTTC AACAATTTGCCCCTTTTTTAGATCGTGTGGTTACCATGAATCGGAAAAAAGCCGATTTATTAGGTTATCAAAATCATCCA TACGATGCTCTGTTGGATTTGTATGAACCTGATATGACCACAGCAAAAACGAAGCAAATTTTCGACAAACTCAAAAATAC AATAACGGTATGGATAAGAAAAATTTCTACTCAAAAAATAGAAAATAATTTTTTATTTGGAAAATGGGATCATGATAAGC AAATAGCATTTAGCCATCAGATCTTAAATGCTATGGGATATGATTTTAACAAAGGTCGATTAGACTTTTCCTCTCATCCT TTTTCTTCTGCTAGCCATCCAACCGACAGTCGTATTACAACACGCATTCACCCGTCTTCACTTATGAGTAGTATTTCGGT TATTTTACATGAAGGAGGACACGCCTTATATGAAATGGGTTTGCCACAAAATCTTTATGGAACACCCCTAGGAGATGCTT GTTCATTAGGAATTCATGAAAGTCAATCTCGATGGTGGGAAACGAGAATTGGACTTCATAAATCATTTTGGAAACACTTT TTCCCCATTTTAAAAAATACTTTTCCAGGTCGGCTCGATCAAGTTCATTTAAACTCTTTTTATCAAGCGATTAATAAAGT TGAGCCTTCCTTCATTCGCGTGGAAGCCGATGAAATGACTTATCCTTTACATGTGATTATACGTTTTGAATTGGAAAAAG CTTTAATCGAAGGTTCAATAAATGTTCGCGAAGTTCCCGAAGCATGGAATGCAAAAATGAAAGAATACTTGGGTATAACA CCTAGTCATCATAATGAAGGTTGCTTACAAGACATTCATTGGTCAATGGGTGCATTCGGATATTTTCCAACGTATACATT AGGCAATCTCTATGCGGCTCACCTTTTTGAAGCTTTTGCTAAACAATATCCTGACTGGGAACAACGTATCTCAACCGGTG AATTAAATTTTGTCAAAGCATGGTTATCCGAGCATATTTATCAACATGGGCGTCGTTACTCTAGTCGTGAACTTCTCAAG TTAGCAACAGGTCATGCTTTTAATGCTAATGCATACATCCGCTACCTTCAAGATAAGTATAGTCAAATCTATCAGCTATA A
Upstream 100 bases:
>100_bases TAGGGCCACGCATTCAACGTATTTTTATTTATGAAGAAGGAAGCCAAGTTCGTTGATCAATGAATGCGGATAAATGATTA GGAAACAGGAAGGATTTCGT
Downstream 100 bases:
>100_bases AAATACACATCTGTGCGGAATGATACTTATCGATTATTCAGCACAGATGAAAAAGCTTTCAAAGAGTAAGGAAAAGTACC TAAACTGCTCTGGTAAAATC
Product: putative thermostable carboxypeptidase 1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MSKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELI AQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHP YDALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHF FPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGIT PSHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK LATGHAFNANAYIRYLQDKYSQIYQL
Sequences:
>Translated_506_residues MSKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELI AQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHP YDALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHF FPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGIT PSHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK LATGHAFNANAYIRYLQDKYSQIYQL >Mature_505_residues SKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELIA QDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHPY DALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHPF SSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHFF PILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGITP SHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLKL ATGHAFNANAYIRYLQDKYSQIYQL
Specific function: Unknown
COG id: COG2317
COG function: function code E; Zn-dependent carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001333 [H]
Pfam domain/function: PF02074 Peptidase_M32 [H]
EC number: NA
Molecular weight: Translated: 58469; Mature: 58338
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH SQKFANTLSKLIDLSSGELIAQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQS HHHHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHPYDALLDLYEPDMTTAKTKQI HHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH FDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHE CCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCHHHCCCCH SQSRWWETRIGLHKSFWKHFFPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC YPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGITPSHHNEGCLQDIHWSMGAFG CCEEEEEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC YFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK CCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH LATGHAFNANAYIRYLQDKYSQIYQL HHCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKT CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH SQKFANTLSKLIDLSSGELIAQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQS HHHHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHPYDALLDLYEPDMTTAKTKQI HHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH FDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHE CCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCHHHCCCCH SQSRWWETRIGLHKSFWKHFFPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC YPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGITPSHHNEGCLQDIHWSMGAFG CCEEEEEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC YFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK CCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH LATGHAFNANAYIRYLQDKYSQIYQL HHCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]