Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is ypwA [H]

Identifier: 46446264

GI number: 46446264

Start: 769488

End: 771008

Strand: Reverse

Name: ypwA [H]

Synonym: pc0630

Alternate gene names: 46446264

Gene position: 771008-769488 (Counterclockwise)

Preceding gene: 46446265

Following gene: 46446262

Centisome position: 31.93

GC content: 37.02

Gene sequence:

>1521_bases
ATGAGTAAAACTCAAAAAGAGTATCAAAAACTACATGTACTTAGTAAACATGCACGCATTCTACAAGGTATTTCTTCTCA
TTTAGATTGGGACCAAGAAACCTATATGCCTTTTGGTAGCGCAGCTATTCGCGCAGAGCAACTTAAAACAATGGCAGGTT
TAATTCATCGAGAAAAAACAAGTCAAAAATTCGCAAATACCCTTTCTAAACTTATCGATCTTTCTAGCGGCGAATTGATT
GCACAAGACCTCACGCCTGCGCAATCCTCTGCTGTTAAAGAATGGCGTCGAGATTATTTGCAAGATACTGCCATGCCAGC
AGAATTCGTTGAAGAGTTTGCTCAATTAACTTCTCAATCTGTTTTGGCTTGGCGCAACGCAAAAAAATCAAATTCCTTTC
AACAATTTGCCCCTTTTTTAGATCGTGTGGTTACCATGAATCGGAAAAAAGCCGATTTATTAGGTTATCAAAATCATCCA
TACGATGCTCTGTTGGATTTGTATGAACCTGATATGACCACAGCAAAAACGAAGCAAATTTTCGACAAACTCAAAAATAC
AATAACGGTATGGATAAGAAAAATTTCTACTCAAAAAATAGAAAATAATTTTTTATTTGGAAAATGGGATCATGATAAGC
AAATAGCATTTAGCCATCAGATCTTAAATGCTATGGGATATGATTTTAACAAAGGTCGATTAGACTTTTCCTCTCATCCT
TTTTCTTCTGCTAGCCATCCAACCGACAGTCGTATTACAACACGCATTCACCCGTCTTCACTTATGAGTAGTATTTCGGT
TATTTTACATGAAGGAGGACACGCCTTATATGAAATGGGTTTGCCACAAAATCTTTATGGAACACCCCTAGGAGATGCTT
GTTCATTAGGAATTCATGAAAGTCAATCTCGATGGTGGGAAACGAGAATTGGACTTCATAAATCATTTTGGAAACACTTT
TTCCCCATTTTAAAAAATACTTTTCCAGGTCGGCTCGATCAAGTTCATTTAAACTCTTTTTATCAAGCGATTAATAAAGT
TGAGCCTTCCTTCATTCGCGTGGAAGCCGATGAAATGACTTATCCTTTACATGTGATTATACGTTTTGAATTGGAAAAAG
CTTTAATCGAAGGTTCAATAAATGTTCGCGAAGTTCCCGAAGCATGGAATGCAAAAATGAAAGAATACTTGGGTATAACA
CCTAGTCATCATAATGAAGGTTGCTTACAAGACATTCATTGGTCAATGGGTGCATTCGGATATTTTCCAACGTATACATT
AGGCAATCTCTATGCGGCTCACCTTTTTGAAGCTTTTGCTAAACAATATCCTGACTGGGAACAACGTATCTCAACCGGTG
AATTAAATTTTGTCAAAGCATGGTTATCCGAGCATATTTATCAACATGGGCGTCGTTACTCTAGTCGTGAACTTCTCAAG
TTAGCAACAGGTCATGCTTTTAATGCTAATGCATACATCCGCTACCTTCAAGATAAGTATAGTCAAATCTATCAGCTATA
A

Upstream 100 bases:

>100_bases
TAGGGCCACGCATTCAACGTATTTTTATTTATGAAGAAGGAAGCCAAGTTCGTTGATCAATGAATGCGGATAAATGATTA
GGAAACAGGAAGGATTTCGT

Downstream 100 bases:

>100_bases
AAATACACATCTGTGCGGAATGATACTTATCGATTATTCAGCACAGATGAAAAAGCTTTCAAAGAGTAAGGAAAAGTACC
TAAACTGCTCTGGTAAAATC

Product: putative thermostable carboxypeptidase 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELI
AQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHP
YDALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP
FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHF
FPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGIT
PSHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK
LATGHAFNANAYIRYLQDKYSQIYQL

Sequences:

>Translated_506_residues
MSKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELI
AQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHP
YDALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP
FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHF
FPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGIT
PSHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK
LATGHAFNANAYIRYLQDKYSQIYQL
>Mature_505_residues
SKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKTSQKFANTLSKLIDLSSGELIA
QDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQSVLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHPY
DALLDLYEPDMTTAKTKQIFDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHPF
SSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHESQSRWWETRIGLHKSFWKHFF
PILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMTYPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGITP
SHHNEGCLQDIHWSMGAFGYFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLKL
ATGHAFNANAYIRYLQDKYSQIYQL

Specific function: Unknown

COG id: COG2317

COG function: function code E; Zn-dependent carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M32 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001333 [H]

Pfam domain/function: PF02074 Peptidase_M32 [H]

EC number: NA

Molecular weight: Translated: 58469; Mature: 58338

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTQKEYQKLHVLSKHARILQGISSHLDWDQETYMPFGSAAIRAEQLKTMAGLIHREKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
SQKFANTLSKLIDLSSGELIAQDLTPAQSSAVKEWRRDYLQDTAMPAEFVEEFAQLTSQS
HHHHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VLAWRNAKKSNSFQQFAPFLDRVVTMNRKKADLLGYQNHPYDALLDLYEPDMTTAKTKQI
HHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH
FDKLKNTITVWIRKISTQKIENNFLFGKWDHDKQIAFSHQILNAMGYDFNKGRLDFSSHP
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
FSSASHPTDSRITTRIHPSSLMSSISVILHEGGHALYEMGLPQNLYGTPLGDACSLGIHE
CCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCHHHCCCCH
SQSRWWETRIGLHKSFWKHFFPILKNTFPGRLDQVHLNSFYQAINKVEPSFIRVEADEMT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
YPLHVIIRFELEKALIEGSINVREVPEAWNAKMKEYLGITPSHHNEGCLQDIHWSMGAFG
CCEEEEEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
YFPTYTLGNLYAAHLFEAFAKQYPDWEQRISTGELNFVKAWLSEHIYQHGRRYSSRELLK
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
LATGHAFNANAYIRYLQDKYSQIYQL
HHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]