Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46445998

Identifier: 46445998

GI number: 46445998

Start: 489844

End: 491367

Strand: Direct

Name: 46445998

Synonym: pc0364

Alternate gene names: NA

Gene position: 489844-491367 (Clockwise)

Preceding gene: 46445997

Following gene: 46445999

Centisome position: 20.29

GC content: 32.48

Gene sequence:

>1524_bases
GTGAGACTTTTTTTGTGTACAGCTCTATATTCTATTTTGATCTTTCATTTCCCTATGATAAGTCAAATTCATCAAGGCTT
TGACGAGCAAATCGTTATTCATTCAGGCGAGGCTAAATATAATGGAAAAGATATTCATTTAATAGGACAAGTCACGATTC
AGCACGGGCTTGGAAAAATTTCTGCTCAAATTTTGTCTATATCTCCTTCTCAATCAGATCTTAAGAAACACTTTTCATTC
TTTCATATTCGTGACAATGTGTTAATTGAACTTCAGGATGGAGGAGAGATTGTTTGCCAGGAAGCAGAAATTGATTATTC
TCAATTAAAGGGACATTTTAAAGGCAACACAATCTATCCTGACGTTATTTATAAAAATCATGGGGTGAAAGATCATGAAA
GAGACTCTCTTATTATTAAAAGCTTGGAAATGGAAGTTGCTTTAGCTAGGATTCCAATATCAGAAAATCAAGTTTTAAAA
ACTGTTGTTAAAAGTCTAGAAGCTAAGCATCACGTTCGTGCTCACTATTTAGATGATTATACTTTAATAGCTGATCGGGC
TTTTTTTGAATGTTTACAAACAAATAGGTCTGAAGGAATTCTTACCTTATTTGCAAAAGAGCAGCAACCTTATTGCTTAT
TGACCAATAGAAGTGGCGATCATATTCAAGCAGAAAAAATCAAGATGGTGACATTTCAAAAAAAATTGTTTTTAAATAAA
CCGAAAGGAAGTCTTCACCATCAAGGAAAAAACTCATTGAGACAGAAGCTTGATTTTAGTGCTGATGAATTAGTGTGGGA
TCAATCTTCGCAACGTTTGATTTTAAAAGGAAATGTAAAAGTTTATCAAGATCAAGTTTTTCAACTTGATACGAAACAAG
AATTAATTATTGAACAGCAAATTTTAAATGGGCAAAAAACCCTTCGTTCGATGATCTCTCCCAAACAGACGACTTTGATA
TATGACTATGATTCGCAAAAAGAGCTTTCGTATAAAATTATAAGTCCAGGAAAATTAGTTATTGATCACGAAAATTTTGT
GACAACAATAGAAGGTTTAAAAGATAAAGAGGGAAATTTAGTCATAGGCGAACAAGTCTATTTTGAAAATTCTTTTGGGG
ATATATATGCAGATCAAGTTTATATTTCCTACGAATGGAAAAATCAGCGACTAATCCCATCAAAAATAATTTTAACGGGT
AATATTAAACTAATGAATCGCTACGATGGTTTATCTCAGGGAACAAGTTCTATTCTTCAGTATGCGATGGCAGATCAGGT
AGAATATTTTCCAGATTCACATGAAATGACTCTTTTTGGAAAAAATGGGCATCGTGTTCTTTTTTTTGATAAAGTGAATA
ATGTTCAAATAAGTGCCCCTGCCTTGAGAATTCGAAATAATAAGAAAAATCACAAAAATTCATTTCAAGGCATTGGAGAT
GTGCGTTTTACTTTTATTGAAAAAGAGCTAAGTCAATTTAAACAGCGTTTTAGCTTAGATGATCATACAAAACAGGAGGA
ATGA

Upstream 100 bases:

>100_bases
AAGGAAGTGCTAAAAGAATTCAACTTTCTTTTTCTCAGAATGATCGTTCATTTACTGCCCAAGATTTGCAAGCAGCCTTC
CAGGATTGGGGCGAACTATT

Downstream 100 bases:

>100_bases
TGAGCCTTAATGCTTATTCCATTTGTTTAGACGTTCGGAATATTGTTAAAAAATACAATGGAAAAAGGGTTGTTAATGAA
CTTTCATTTCAAGTTCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF
FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK
TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK
PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI
YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG
NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD
VRFTFIEKELSQFKQRFSLDDHTKQEE

Sequences:

>Translated_507_residues
MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF
FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK
TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK
PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI
YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG
NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD
VRFTFIEKELSQFKQRFSLDDHTKQEE
>Mature_507_residues
MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKISAQILSISPSQSDLKKHFSF
FHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYPDVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLK
TVVKSLEAKHHVRAHYLDDYTLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK
PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQILNGQKTLRSMISPKQTTLI
YDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNLVIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTG
NIKLMNRYDGLSQGTSSILQYAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD
VRFTFIEKELSQFKQRFSLDDHTKQEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58478; Mature: 58478

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKI
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEEEHHCCCCE
SAQILSISPSQSDLKKHFSFFHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYP
EEEEEEECCCHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCHHHHCCCCCCCEECC
DVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLKTVVKSLEAKHHVRAHYLDDY
CEEEECCCCCCCCCCCCEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCE
TLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK
EEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCEECCEEEEEEEEHHHHCCC
PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQ
CCCCCCCCCHHHHHHHCCCCHHHEEECCCCCEEEEECCCEEEECCEEEECCHHHHHHHHH
ILNGQKTLRSMISPKQTTLIYDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNL
HHCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCE
VIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTGNIKLMNRYDGLSQGTSSILQ
EEEEEEEEECCCCCEEEEEEEEEEEECCCEECCEEEEEECCEEEEECCCCCCHHHHHHHH
YAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD
HHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCCCHHCCCCCC
VRFTFIEKELSQFKQRFSLDDHTKQEE
CHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRLFLCTALYSILIFHFPMISQIHQGFDEQIVIHSGEAKYNGKDIHLIGQVTIQHGLGKI
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEEEHHCCCCE
SAQILSISPSQSDLKKHFSFFHIRDNVLIELQDGGEIVCQEAEIDYSQLKGHFKGNTIYP
EEEEEEECCCHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCHHHHCCCCCCCEECC
DVIYKNHGVKDHERDSLIIKSLEMEVALARIPISENQVLKTVVKSLEAKHHVRAHYLDDY
CEEEECCCCCCCCCCCCEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCE
TLIADRAFFECLQTNRSEGILTLFAKEQQPYCLLTNRSGDHIQAEKIKMVTFQKKLFLNK
EEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCEECCEEEEEEEEHHHHCCC
PKGSLHHQGKNSLRQKLDFSADELVWDQSSQRLILKGNVKVYQDQVFQLDTKQELIIEQQ
CCCCCCCCCHHHHHHHCCCCHHHEEECCCCCEEEEECCCEEEECCEEEECCHHHHHHHHH
ILNGQKTLRSMISPKQTTLIYDYDSQKELSYKIISPGKLVIDHENFVTTIEGLKDKEGNL
HHCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCEEEECCCCCCCCCE
VIGEQVYFENSFGDIYADQVYISYEWKNQRLIPSKIILTGNIKLMNRYDGLSQGTSSILQ
EEEEEEEEECCCCCEEEEEEEEEEEECCCEECCEEEEEECCEEEEECCCCCCHHHHHHHH
YAMADQVEYFPDSHEMTLFGKNGHRVLFFDKVNNVQISAPALRIRNNKKNHKNSFQGIGD
HHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCEEEECCEEEECCCCCCCCHHCCCCCC
VRFTFIEKELSQFKQRFSLDDHTKQEE
CHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA