| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46445966
Identifier: 46445966
GI number: 46445966
Start: 451857
End: 452843
Strand: Direct
Name: 46445966
Synonym: pc0332
Alternate gene names: NA
Gene position: 451857-452843 (Clockwise)
Preceding gene: 46445965
Following gene: 46445974
Centisome position: 18.71
GC content: 34.35
Gene sequence:
>987_bases ATGAAAAATATTTTTTTTTGGTCAATTTTAATGATACTATTAACTTCCTCAGTTTATACCAATGAATTAATGCATCGATC TCTTTTGGTAACGGAGAAAAAACAAGATATTTTTGTTTGGGAAGAAATGCTATTAAATTCTTTTGATGAATTAATTGTAT CTTGGGATGCAAAAAGGCCAGTAGAGGGGTCATACTTAATTCAAGTAAGTTTGTTTATTAAAGAATGGTCTCCATGGCTT GATTATGCGTTTTGGGGTGCCCATGATCAATATACATTTAAAAAAAAATTATCTAAAGCAAACTTACAAGTCTGTCAAAA TATTGTTGAGGTTCTAAAAGGCAATAAAGCGAACGGATTCCGAATTCGTGTAATAGCGAAAGATAATGCTTCTTTAGAGC AATTTAGAACGTTGCATATTTCTGCTACAGATCATACTACACATAAAGTTATTGCAACCGCTTTCGAAAATATATTCATT AACTTAGAAATTGCTGGACTTTCTCAAATTACTTTACCCGATGAACGTCACTTGCGTTTATGCTCGCCAACTTCTACAAC TGCTGTAATACGGTTTTTATCAAATTCTTTGAATCTCTCACCGCTTGAATTTGCAGATACCGTTATAGACTCTGCATTCG ATATATATGGGAGCTGGATTTTAAACACTGCACAAGCTTCCCACAAACTCGGAAATCCTTGGAATTGCTTTGTAGCTCGC TTTACAAATTTTAACCAAATTGTTGATCAATTACGTAAAGGATATCCTGTTGTAGTAAGCGTAAAAGGACCATTAAAAGG CAGTGCTCTTCCTTATGAGTCAGGACACTTATTAGTGGTGAAAGGGTATGATTCAAAAAAACAAGAAGTATTTTGTATAG ATCCAGCGTTTTCTACAAATGAGTTAACCCATGTCACATATGCTTTGGATGATTTTCTGGTAGCTTGGGGTAGACGAAAA GGAATCGCTTACGTTTTCGATCAGTAA
Upstream 100 bases:
>100_bases AGTTTTAAGATAACAAAAAGAAGTTCAAAATATATATATAACCCTATAGTTTTATATATATTTTAATTTTGTTTTTTATT TTTAGAATGCAAGGCTTTTG
Downstream 100 bases:
>100_bases GATTTTAAATCAAATCTTCATAAGTAAACTATTTTTTGCCCTGTCATCTATGAATCTTTGATTTTAAGTAATTGCTTATT CAATTGAAGGAGGTTAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MKNIFFWSILMILLTSSVYTNELMHRSLLVTEKKQDIFVWEEMLLNSFDELIVSWDAKRPVEGSYLIQVSLFIKEWSPWL DYAFWGAHDQYTFKKKLSKANLQVCQNIVEVLKGNKANGFRIRVIAKDNASLEQFRTLHISATDHTTHKVIATAFENIFI NLEIAGLSQITLPDERHLRLCSPTSTTAVIRFLSNSLNLSPLEFADTVIDSAFDIYGSWILNTAQASHKLGNPWNCFVAR FTNFNQIVDQLRKGYPVVVSVKGPLKGSALPYESGHLLVVKGYDSKKQEVFCIDPAFSTNELTHVTYALDDFLVAWGRRK GIAYVFDQ
Sequences:
>Translated_328_residues MKNIFFWSILMILLTSSVYTNELMHRSLLVTEKKQDIFVWEEMLLNSFDELIVSWDAKRPVEGSYLIQVSLFIKEWSPWL DYAFWGAHDQYTFKKKLSKANLQVCQNIVEVLKGNKANGFRIRVIAKDNASLEQFRTLHISATDHTTHKVIATAFENIFI NLEIAGLSQITLPDERHLRLCSPTSTTAVIRFLSNSLNLSPLEFADTVIDSAFDIYGSWILNTAQASHKLGNPWNCFVAR FTNFNQIVDQLRKGYPVVVSVKGPLKGSALPYESGHLLVVKGYDSKKQEVFCIDPAFSTNELTHVTYALDDFLVAWGRRK GIAYVFDQ >Mature_328_residues MKNIFFWSILMILLTSSVYTNELMHRSLLVTEKKQDIFVWEEMLLNSFDELIVSWDAKRPVEGSYLIQVSLFIKEWSPWL DYAFWGAHDQYTFKKKLSKANLQVCQNIVEVLKGNKANGFRIRVIAKDNASLEQFRTLHISATDHTTHKVIATAFENIFI NLEIAGLSQITLPDERHLRLCSPTSTTAVIRFLSNSLNLSPLEFADTVIDSAFDIYGSWILNTAQASHKLGNPWNCFVAR FTNFNQIVDQLRKGYPVVVSVKGPLKGSALPYESGHLLVVKGYDSKKQEVFCIDPAFSTNELTHVTYALDDFLVAWGRRK GIAYVFDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37441; Mature: 37441
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIFFWSILMILLTSSVYTNELMHRSLLVTEKKQDIFVWEEMLLNSFDELIVSWDAKRP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHEECCCCCC VEGSYLIQVSLFIKEWSPWLDYAFWGAHDQYTFKKKLSKANLQVCQNIVEVLKGNKANGF CCCCEEEEEEEEEECCCHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE RIRVIAKDNASLEQFRTLHISATDHTTHKVIATAFENIFINLEIAGLSQITLPDERHLRL EEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHCEEEEEEEEECCEEECCCCCCCEEE CSPTSTTAVIRFLSNSLNLSPLEFADTVIDSAFDIYGSWILNTAQASHKLGNPWNCFVAR ECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE FTNFNQIVDQLRKGYPVVVSVKGPLKGSALPYESGHLLVVKGYDSKKQEVFCIDPAFSTN CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCC ELTHVTYALDDFLVAWGRRKGIAYVFDQ CCEEEEHHHHHHHHHHCCCCCEEEEECC >Mature Secondary Structure MKNIFFWSILMILLTSSVYTNELMHRSLLVTEKKQDIFVWEEMLLNSFDELIVSWDAKRP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHEECCCCCC VEGSYLIQVSLFIKEWSPWLDYAFWGAHDQYTFKKKLSKANLQVCQNIVEVLKGNKANGF CCCCEEEEEEEEEECCCHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE RIRVIAKDNASLEQFRTLHISATDHTTHKVIATAFENIFINLEIAGLSQITLPDERHLRL EEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHCEEEEEEEEECCEEECCCCCCCEEE CSPTSTTAVIRFLSNSLNLSPLEFADTVIDSAFDIYGSWILNTAQASHKLGNPWNCFVAR ECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE FTNFNQIVDQLRKGYPVVVSVKGPLKGSALPYESGHLLVVKGYDSKKQEVFCIDPAFSTN CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCC ELTHVTYALDDFLVAWGRRKGIAYVFDQ CCEEEEHHHHHHHHHHCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA