| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is cdsA [H]
Identifier: 46445954
GI number: 46445954
Start: 438511
End: 439449
Strand: Reverse
Name: cdsA [H]
Synonym: pc0320
Alternate gene names: 46445954
Gene position: 439449-438511 (Counterclockwise)
Preceding gene: 46445955
Following gene: 46445953
Centisome position: 18.2
GC content: 36.0
Gene sequence:
>939_bases TTGCACCTGTCCTTTGGCCAGATTTTACTCCTAATCATCTTCTGGAAGCCATTGTCGATTATCAAAAAAGAGAAAGAAGA TGGGGAGGCGTATAAATTGGCAAATCAGTTTAAACAACGAGTTGTCACAAGCAGCGTGACTATTTTCTTAGTCATTATCT CGATTTATTTTTCTCATGTTCCTTACTTTAAACCTATTTTTGTATTACTTAATGCAGCAATTATCTCATTGGCTCTTCTC GAGTATTATCAATTGGCACATTATAAAGGATTTCAACCTTTAAATTTATTAGGTGTGGGAACAACAACAGCTTATGTCAT CAGCAGTTTTTACGCTGGACAAGAACCCAATTTATCTGATCTTCCTCTTTTTGTTTTATTAGGCTGTCTTCTACTATTTT TTTTAGCCTATTTTAATAAACAGTTAGAACCCTTAGGTAATATTGCTGTCAACCTATTCGGAATTGGCTATGTCGTCATC CCTTTGACATGTGCTTTGCAAATCAATTATTTTTCATCTCCTCATATAACTGATGGACGTTTGTGGCTCGCCTATGCACT TGCTGTTACCAAAATGACAGATGTTGGTGGATATATAAGCGGAAAAATTTTCGGAAAAATCAAATTAGCTTCTCATATTA GCCCCAAAAAAACTATCGAAGGTTCCATTGGAGGTTTAATATTGTCTCTTTTGACTAGCCTAGCTTTTTATTATTTTGTA TTCCCTTTTAAACATCCAATCTCCTTTTGGCAAAGTATATGGCTAGGAATAGTCATCAGTGTACTTTCTCAATTCGGAGA CTTATCTGAATCCATCTTAAAGAGAGACGCTGGGGTCAAAGATAGCAGTCAACTACCGGGTTTAGGGGGCATCCTTGATA TGACAGATTCTCTTGTTTTTACCTTGCCTTTAGTGTATCTTTGGCTAAAAGTTTCATGA
Upstream 100 bases:
>100_bases ACCCATCAATGGCCAGATCCTGAGCTATTAATTCGAACAAGTGGTGAAATGAGAATTAGTAATTTTCTTCTTTGGCAAAT TTCTTATACAGAAATTTATA
Downstream 100 bases:
>100_bases CATGAGTAAAATCTTTCCTCTATAATATGAGGATATTAAATATGAGAAATTTATGATCATTACTATTGATGGACCTGTTG CAACAGGAAAAAGTACAATT
Product: putative phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MHLSFGQILLLIIFWKPLSIIKKEKEDGEAYKLANQFKQRVVTSSVTIFLVIISIYFSHVPYFKPIFVLLNAAIISLALL EYYQLAHYKGFQPLNLLGVGTTTAYVISSFYAGQEPNLSDLPLFVLLGCLLLFFLAYFNKQLEPLGNIAVNLFGIGYVVI PLTCALQINYFSSPHITDGRLWLAYALAVTKMTDVGGYISGKIFGKIKLASHISPKKTIEGSIGGLILSLLTSLAFYYFV FPFKHPISFWQSIWLGIVISVLSQFGDLSESILKRDAGVKDSSQLPGLGGILDMTDSLVFTLPLVYLWLKVS
Sequences:
>Translated_312_residues MHLSFGQILLLIIFWKPLSIIKKEKEDGEAYKLANQFKQRVVTSSVTIFLVIISIYFSHVPYFKPIFVLLNAAIISLALL EYYQLAHYKGFQPLNLLGVGTTTAYVISSFYAGQEPNLSDLPLFVLLGCLLLFFLAYFNKQLEPLGNIAVNLFGIGYVVI PLTCALQINYFSSPHITDGRLWLAYALAVTKMTDVGGYISGKIFGKIKLASHISPKKTIEGSIGGLILSLLTSLAFYYFV FPFKHPISFWQSIWLGIVISVLSQFGDLSESILKRDAGVKDSSQLPGLGGILDMTDSLVFTLPLVYLWLKVS >Mature_312_residues MHLSFGQILLLIIFWKPLSIIKKEKEDGEAYKLANQFKQRVVTSSVTIFLVIISIYFSHVPYFKPIFVLLNAAIISLALL EYYQLAHYKGFQPLNLLGVGTTTAYVISSFYAGQEPNLSDLPLFVLLGCLLLFFLAYFNKQLEPLGNIAVNLFGIGYVVI PLTCALQINYFSSPHITDGRLWLAYALAVTKMTDVGGYISGKIFGKIKLASHISPKKTIEGSIGGLILSLLTSLAFYYFV FPFKHPISFWQSIWLGIVISVLSQFGDLSESILKRDAGVKDSSQLPGLGGILDMTDSLVFTLPLVYLWLKVS
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=141, Percent_Identity=39.7163120567376, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787677, Length=122, Percent_Identity=38.5245901639344, Blast_Score=85, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 34714; Mature: 34714
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLSFGQILLLIIFWKPLSIIKKEKEDGEAYKLANQFKQRVVTSSVTIFLVIISIYFSHV CCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PYFKPIFVLLNAAIISLALLEYYQLAHYKGFQPLNLLGVGTTTAYVISSFYAGQEPNLSD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC LPLFVLLGCLLLFFLAYFNKQLEPLGNIAVNLFGIGYVVIPLTCALQINYFSSPHITDGR CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCH LWLAYALAVTKMTDVGGYISGKIFGKIKLASHISPKKTIEGSIGGLILSLLTSLAFYYFV HHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHH FPFKHPISFWQSIWLGIVISVLSQFGDLSESILKRDAGVKDSSQLPGLGGILDMTDSLVF HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH TLPLVYLWLKVS HHHHHHHHHCCC >Mature Secondary Structure MHLSFGQILLLIIFWKPLSIIKKEKEDGEAYKLANQFKQRVVTSSVTIFLVIISIYFSHV CCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PYFKPIFVLLNAAIISLALLEYYQLAHYKGFQPLNLLGVGTTTAYVISSFYAGQEPNLSD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC LPLFVLLGCLLLFFLAYFNKQLEPLGNIAVNLFGIGYVVIPLTCALQINYFSSPHITDGR CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCH LWLAYALAVTKMTDVGGYISGKIFGKIKLASHISPKKTIEGSIGGLILSLLTSLAFYYFV HHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHH FPFKHPISFWQSIWLGIVISVLSQFGDLSESILKRDAGVKDSSQLPGLGGILDMTDSLVF HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH TLPLVYLWLKVS HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]