| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ybeQ [C]
Identifier: 46445950
GI number: 46445950
Start: 434217
End: 435107
Strand: Direct
Name: ybeQ [C]
Synonym: pc0316
Alternate gene names: 46445950
Gene position: 434217-435107 (Clockwise)
Preceding gene: 46445949
Following gene: 46445951
Centisome position: 17.98
GC content: 33.67
Gene sequence:
>891_bases ATGATGTCATTTTCTTTCAATAAGTTACTTATTTTATTTACATTGTCTTACAGCTGGCTAGTTAGTGCTTCACAAGGGTT TTTAGAAGAAAAAAATTTGAATAAAACGGCTAATTTGCCTATTCGGGAAACACTTCAAGAAAGATTAACTTCTTTAGCTC TTGAAGGGGATATGAACGCCCAGTACAAGCTTGGCATGTTATTAATGAATGGCGAAAAAGAGGATTGTCTTAAAGGCGTT GAATGGCTTGAAATAGCGGCGGAGCAAGGCCAAGTTGAGGCTCAACTGACTTTAGGAAAGATGTATCAAATAGGCTTGAA AGTCGAAAGAAATTCTCTTACCTCTCTATACTGGATTTCACAAGCGGCATTGCAAGGAAATGAAAAAGCTATTCAATCCT TAAAAAACTTATTTTCGACTTTTCAAGAGTTATACAGTATTCATTTACCAAAAGAAGAGAGGAACTATTGGAAAATAGAT AATCATCAGGTGAGTATTGACGAGTATATTATTGAGTCTGTCCCATTAAATGAAACTGTTACTCATTGGTCGCAAATTTT TACTATTTCGTTTATGTCCAAAAAAATATTAAATCGAGATTTTAAAACAGCCTTGAGCAGTATGAATGCTGTTAAAGAAT TGATGAGAAAAAATTATGGGGGCAAGGCTAAATTGACTCCTATACAGGTGACAGATAATGATGTAATTTATGAGTCTTTT ATCCCTCTTAATAAAACGAATCAGTTTGAAAATGAAATTGTCAGACTTATTAGAACTCCACGAGGTTTGTATCGGATTGC TTATTCGAGAAAAAATTCGTATATTGACGATAAAACCAAGCATAAGTGGTTAAAAAGTTTGTGTGAAGCAGATTTGATCA AACTGAAGTAA
Upstream 100 bases:
>100_bases GAGTAATTATTCATTGCAAGTGAATCATTGTTATTTTTAATTCTCTAAATTTTAATCGATTAATAATTAGATTCTCATTT TATCCTAATTAAAGGAGTCA
Downstream 100 bases:
>100_bases TTCTCCTTGATGAATTGTCCTCGGCGCGACTCGAACGCGCGGCCTGTTGCTTAGGAGGCAACCGCTCTATCCACCTGAGC TACGAGAACATAATGGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MMSFSFNKLLILFTLSYSWLVSASQGFLEEKNLNKTANLPIRETLQERLTSLALEGDMNAQYKLGMLLMNGEKEDCLKGV EWLEIAAEQGQVEAQLTLGKMYQIGLKVERNSLTSLYWISQAALQGNEKAIQSLKNLFSTFQELYSIHLPKEERNYWKID NHQVSIDEYIIESVPLNETVTHWSQIFTISFMSKKILNRDFKTALSSMNAVKELMRKNYGGKAKLTPIQVTDNDVIYESF IPLNKTNQFENEIVRLIRTPRGLYRIAYSRKNSYIDDKTKHKWLKSLCEADLIKLK
Sequences:
>Translated_296_residues MMSFSFNKLLILFTLSYSWLVSASQGFLEEKNLNKTANLPIRETLQERLTSLALEGDMNAQYKLGMLLMNGEKEDCLKGV EWLEIAAEQGQVEAQLTLGKMYQIGLKVERNSLTSLYWISQAALQGNEKAIQSLKNLFSTFQELYSIHLPKEERNYWKID NHQVSIDEYIIESVPLNETVTHWSQIFTISFMSKKILNRDFKTALSSMNAVKELMRKNYGGKAKLTPIQVTDNDVIYESF IPLNKTNQFENEIVRLIRTPRGLYRIAYSRKNSYIDDKTKHKWLKSLCEADLIKLK >Mature_296_residues MMSFSFNKLLILFTLSYSWLVSASQGFLEEKNLNKTANLPIRETLQERLTSLALEGDMNAQYKLGMLLMNGEKEDCLKGV EWLEIAAEQGQVEAQLTLGKMYQIGLKVERNSLTSLYWISQAALQGNEKAIQSLKNLFSTFQELYSIHLPKEERNYWKID NHQVSIDEYIIESVPLNETVTHWSQIFTISFMSKKILNRDFKTALSSMNAVKELMRKNYGGKAKLTPIQVTDNDVIYESF IPLNKTNQFENEIVRLIRTPRGLYRIAYSRKNSYIDDKTKHKWLKSLCEADLIKLK
Specific function: Unknown
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34315; Mature: 34315
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSFSFNKLLILFTLSYSWLVSASQGFLEEKNLNKTANLPIRETLQERLTSLALEGDMNA CCCCCHHHEEEHEEHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC QYKLGMLLMNGEKEDCLKGVEWLEIAAEQGQVEAQLTLGKMYQIGLKVERNSLTSLYWIS CEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCEEEECCCCHHHHHHH QAALQGNEKAIQSLKNLFSTFQELYSIHLPKEERNYWKIDNHQVSIDEYIIESVPLNETV HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEHHHHHHHCCCCCHHH THWSQIFTISFMSKKILNRDFKTALSSMNAVKELMRKNYGGKAKLTPIQVTDNDVIYESF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECC IPLNKTNQFENEIVRLIRTPRGLYRIAYSRKNSYIDDKTKHKWLKSLCEADLIKLK CCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMSFSFNKLLILFTLSYSWLVSASQGFLEEKNLNKTANLPIRETLQERLTSLALEGDMNA CCCCCHHHEEEHEEHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC QYKLGMLLMNGEKEDCLKGVEWLEIAAEQGQVEAQLTLGKMYQIGLKVERNSLTSLYWIS CEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCEEEECCCCHHHHHHH QAALQGNEKAIQSLKNLFSTFQELYSIHLPKEERNYWKIDNHQVSIDEYIIESVPLNETV HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEHHHHHHHCCCCCHHH THWSQIFTISFMSKKILNRDFKTALSSMNAVKELMRKNYGGKAKLTPIQVTDNDVIYESF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECC IPLNKTNQFENEIVRLIRTPRGLYRIAYSRKNSYIDDKTKHKWLKSLCEADLIKLK CCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA