| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is pgk [H]
Identifier: 46445873
GI number: 46445873
Start: 335314
End: 336522
Strand: Direct
Name: pgk [H]
Synonym: pc0239
Alternate gene names: 46445873
Gene position: 335314-336522 (Clockwise)
Preceding gene: 46445872
Following gene: 46445874
Centisome position: 13.89
GC content: 38.46
Gene sequence:
>1209_bases GTGAGGGTGAAGGATAAATTATCGATTCGCGATTTAAATTTGAAAGACAAGAAAGCCTTAATTCGTGTCGATTTTAACGT CCCTTTAGAAAAAGGTTTGATTACAGATGATAGTCGTATTCAAGCCTCTCTTCCCACAATTCAATATGTTTTAGATCAAG AAGGAGCCGTTATTTTGATGAGCCATCTCGGTCGTCCTAAAGGTTTGTTTGATTCTAAATTTTCGTTGGCTCCTTGTGCT AAACGTTTATCAGAATTATTAAATAAGCCTGTAAAAATGGCTGCAGATTGTTGTGGATTAGACGTTGAACAGATGGTTCG TCAGCTAAAATCAGGAGAAGTTTTATTGCTTGAAAATTTACGTTTTCACAAAGGCGAAGAAAGGCCTGATGATGAACCTA ATTTTACAAGTGCTTTGTCAGAGTTGGGAGATGTTTATATCAATGATGCTTTTGGAACTGCTCATCGTGCTCATGCTTCG ACAACAAAAATTGCAAAATTTTTTCCCAATCGTGCAGCAGCGGGTTTGTTACTTGAAAAGGAAATTTCTTATCTAGGTTG TGCTTTAACGAATCCTAAACGTCCTTTTTGTGCAGTGTTAGGAGGTGCAAAAATTTCCACAAAGTTTAAAGTCATCGAAG CTTTACAGTCTAAAGCAGATGTTTTATTAATAGGGGGAGCGATGGCTTTCACTTTTTTCAAATCTGAAGGAATACCTATT GGGGATTCGCTTTACGAAAGCGAATTCGTTGCTGTCGCTCGTGAATTGTTAGGTGTTGAGACACAGTCTCGCTGCCGCCT TTTACTACCCATAGACTTGGTCATTGCTAAAAAAATGGATGAATCCTTCACTGAAACGAGAATTATTTCAGTTAAAGAAG GAATTCCTGATGGGTATCAAGGGGTAGATATTGGGCCAGACACTATTAAACTTTATCAAGAAGAATTGAACAGAGCAGCT ACGATTTTTTGGAACGGCCCTTTAGGAGTATTTGAAGTTCCTGCTTTTTCTAAAGGGACTCAAACTATTGCTCAAACTCT TGCTGTTGTCAACGCGATTACTATTGTTGGGGGAGGGGATTCCTTAGCTGCTATAGAACAAGCTGGGGTTTCTAAACAAA TAAACCATCTTTCAACTGGAGGGGGTGCCTCTTTAGAATATATAGAATTTGGGCAATTACCTGGGATTGAAGCTCTATCA GATAAATAA
Upstream 100 bases:
>100_bases GAAATAGAACTTTCTTCATTAGTCTTTTGTCTGTTAATAAGAAACTTGACAGAACTTTTCGTTTAAGTTATTAACTCATT TCATAAATGAATTAAGGAGG
Downstream 100 bases:
>100_bases ATCTTAGAGTTCGAATTTATTTGAACTACAGCTAGTCAAAAAAATATAACACTGCTAAGAAGTTTAATTTTTAACTCTCG GTGTGATATAGCTATCCTTT
Product: 3-phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MRVKDKLSIRDLNLKDKKALIRVDFNVPLEKGLITDDSRIQASLPTIQYVLDQEGAVILMSHLGRPKGLFDSKFSLAPCA KRLSELLNKPVKMAADCCGLDVEQMVRQLKSGEVLLLENLRFHKGEERPDDEPNFTSALSELGDVYINDAFGTAHRAHAS TTKIAKFFPNRAAAGLLLEKEISYLGCALTNPKRPFCAVLGGAKISTKFKVIEALQSKADVLLIGGAMAFTFFKSEGIPI GDSLYESEFVAVARELLGVETQSRCRLLLPIDLVIAKKMDESFTETRIISVKEGIPDGYQGVDIGPDTIKLYQEELNRAA TIFWNGPLGVFEVPAFSKGTQTIAQTLAVVNAITIVGGGDSLAAIEQAGVSKQINHLSTGGGASLEYIEFGQLPGIEALS DK
Sequences:
>Translated_402_residues MRVKDKLSIRDLNLKDKKALIRVDFNVPLEKGLITDDSRIQASLPTIQYVLDQEGAVILMSHLGRPKGLFDSKFSLAPCA KRLSELLNKPVKMAADCCGLDVEQMVRQLKSGEVLLLENLRFHKGEERPDDEPNFTSALSELGDVYINDAFGTAHRAHAS TTKIAKFFPNRAAAGLLLEKEISYLGCALTNPKRPFCAVLGGAKISTKFKVIEALQSKADVLLIGGAMAFTFFKSEGIPI GDSLYESEFVAVARELLGVETQSRCRLLLPIDLVIAKKMDESFTETRIISVKEGIPDGYQGVDIGPDTIKLYQEELNRAA TIFWNGPLGVFEVPAFSKGTQTIAQTLAVVNAITIVGGGDSLAAIEQAGVSKQINHLSTGGGASLEYIEFGQLPGIEALS DK >Mature_402_residues MRVKDKLSIRDLNLKDKKALIRVDFNVPLEKGLITDDSRIQASLPTIQYVLDQEGAVILMSHLGRPKGLFDSKFSLAPCA KRLSELLNKPVKMAADCCGLDVEQMVRQLKSGEVLLLENLRFHKGEERPDDEPNFTSALSELGDVYINDAFGTAHRAHAS TTKIAKFFPNRAAAGLLLEKEISYLGCALTNPKRPFCAVLGGAKISTKFKVIEALQSKADVLLIGGAMAFTFFKSEGIPI GDSLYESEFVAVARELLGVETQSRCRLLLPIDLVIAKKMDESFTETRIISVKEGIPDGYQGVDIGPDTIKLYQEELNRAA TIFWNGPLGVFEVPAFSKGTQTIAQTLAVVNAITIVGGGDSLAAIEQAGVSKQINHLSTGGGASLEYIEFGQLPGIEALS DK
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505763, Length=420, Percent_Identity=42.1428571428571, Blast_Score=334, Evalue=8e-92, Organism=Homo sapiens, GI31543397, Length=420, Percent_Identity=42.1428571428571, Blast_Score=332, Evalue=4e-91, Organism=Escherichia coli, GI1789294, Length=398, Percent_Identity=42.4623115577889, Blast_Score=300, Evalue=7e-83, Organism=Caenorhabditis elegans, GI17508823, Length=418, Percent_Identity=44.2583732057416, Blast_Score=352, Evalue=2e-97, Organism=Saccharomyces cerevisiae, GI6319857, Length=420, Percent_Identity=46.1904761904762, Blast_Score=349, Evalue=4e-97, Organism=Drosophila melanogaster, GI17136394, Length=414, Percent_Identity=42.512077294686, Blast_Score=318, Evalue=4e-87, Organism=Drosophila melanogaster, GI24581203, Length=414, Percent_Identity=39.8550724637681, Blast_Score=301, Evalue=7e-82,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 43630; Mature: 43630
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVKDKLSIRDLNLKDKKALIRVDFNVPLEKGLITDDSRIQASLPTIQYVLDQEGAVILM CCCCCCCCEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCEECCCCEEEEECCCCCEEEE SHLGRPKGLFDSKFSLAPCAKRLSELLNKPVKMAADCCGLDVEQMVRQLKSGEVLLLENL ECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECC RFHKGEERPDDEPNFTSALSELGDVYINDAFGTAHRAHASTTKIAKFFPNRAAAGLLLEK CCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH EISYLGCALTNPKRPFCAVLGGAKISTKFKVIEALQSKADVLLIGGAMAFTFFKSEGIPI HHHHHEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHEEEEECCCCCCC GDSLYESEFVAVARELLGVETQSRCRLLLPIDLVIAKKMDESFTETRIISVKEGIPDGYQ CCHHHHHHHHHHHHHHHCCCCHHCCEEEEEHHHHHHHHHHHHHHHEEEEEECCCCCCCCC GVDIGPDTIKLYQEELNRAATIFWNGPLGVFEVPAFSKGTQTIAQTLAVVNAITIVGGGD CCCCCHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHEEEEECCC SLAAIEQAGVSKQINHLSTGGGASLEYIEFGQLPGIEALSDK CHHHHHHHCHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCC >Mature Secondary Structure MRVKDKLSIRDLNLKDKKALIRVDFNVPLEKGLITDDSRIQASLPTIQYVLDQEGAVILM CCCCCCCCEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCEECCCCEEEEECCCCCEEEE SHLGRPKGLFDSKFSLAPCAKRLSELLNKPVKMAADCCGLDVEQMVRQLKSGEVLLLENL ECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECC RFHKGEERPDDEPNFTSALSELGDVYINDAFGTAHRAHASTTKIAKFFPNRAAAGLLLEK CCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH EISYLGCALTNPKRPFCAVLGGAKISTKFKVIEALQSKADVLLIGGAMAFTFFKSEGIPI HHHHHEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHEEEEECCCCCCC GDSLYESEFVAVARELLGVETQSRCRLLLPIDLVIAKKMDESFTETRIISVKEGIPDGYQ CCHHHHHHHHHHHHHHHCCCCHHCCEEEEEHHHHHHHHHHHHHHHEEEEEECCCCCCCCC GVDIGPDTIKLYQEELNRAATIFWNGPLGVFEVPAFSKGTQTIAQTLAVVNAITIVGGGD CCCCCHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHEEEEECCC SLAAIEQAGVSKQINHLSTGGGASLEYIEFGQLPGIEALSDK CHHHHHHHCHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]