| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is wza [H]
Identifier: 46445820
GI number: 46445820
Start: 277152
End: 278201
Strand: Direct
Name: wza [H]
Synonym: pc0186
Alternate gene names: 46445820
Gene position: 277152-278201 (Clockwise)
Preceding gene: 46445818
Following gene: 46445821
Centisome position: 11.48
GC content: 37.71
Gene sequence:
>1050_bases ATGATGAAATATCTTGCATTTTGCCTCCTCTCCCTCCTTTTTTTTCTCAGCTCTTGTAGTACACCTTGTCATAATTATGA CGTGTTTGGTGCAGATGAATTTGTGATTGATTCTTATAAAATTCGCCAGGGGAAGTTGGCAATTTTGGATATGGAAGGAT CAGACGTTAAGGAATTAGATTGCGATGCAATGGAAGAATATCAAGATGTCATTTCTGAAGATGATATTTTGAATATTGCG ATCTATCATCCGAAACGACGCGATGTGATGGATGCTATTCAATTTATTAATGCAACAATAGGCTTTCGTGTTAGTGAAGG CAGGGTCGATTTTCCAGATATCCCATCCGTTGAAGTAGCAGGTTTATCGCTTGAAGAGGCTAGACAGAAAATACAGCTTT GCTATCAAGAACAAATTCAAGACGTTGAAGTTTTCTTGAATTATCGAAATAGACTTTCCAGAAAAGTTGAACTCACAGGA GCTGTAGCCACTCCTGTCATTGCTGTCGATGGAAAAATTCGTTTATATGAAGTTTTAGCACTAGCTAAAGTACCCAATAA TGCCAATTTTTTTAAAAGTTATGTGGTGAGAGAAGGAAAGCAGCTTCCCATAGATATTTATAAATTGATGAATTTAGGGG ATATGAGTCAAAATATTGTTATGCGTGGAGGAGATCGTATTTTTATTGCCGCTCCAAGTGACTCGACAGTTATGGTGATG GGCGAAGTAGGACATCCGATGGCTGTTAATCTTCCTTATGGTTTTATGTCTTTACGACAAGCACTTGTCTCTGCTGGAGG TATTCCTTTTACAGGTAATCGTGATTGTATCCAAGTCATTAGGGGAAATTTACAAAACCCTAAAATTTACGTTCTTTCTT GGAATCACATTATTCATCTACCTAATGATAGTTTACTCTTGATGCCAGGAGATACGGTTTATGTATCTGAGAAACCCATT ACGCAATGGAATAGGTTTATTGATCAGTTACTGCCAAGCTGCTTAGGGGTTCAAGCAGCTTATGGAACTTACAGGCTTTT TAGAAATTGA
Upstream 100 bases:
>100_bases GTTAAAGCGGTTTAGAAAGAGAAAATGCTTTTGATTTAATATAAAATAGGCTAAGAAAGATAACTCCTAAAAGTTTAAAG TTTTAAAGTTTGTAACCTCT
Downstream 100 bases:
>100_bases TCGCTTGGAGATGAGTAATTGTTTTTGTATATAATAAGTACTTTAAGATATGTAGATTAGGTTAGAAATGAGTAAGACAA CAGATAAAGATGACAAACTT
Product: putative polysaccharide export protein wza
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MMKYLAFCLLSLLFFLSSCSTPCHNYDVFGADEFVIDSYKIRQGKLAILDMEGSDVKELDCDAMEEYQDVISEDDILNIA IYHPKRRDVMDAIQFINATIGFRVSEGRVDFPDIPSVEVAGLSLEEARQKIQLCYQEQIQDVEVFLNYRNRLSRKVELTG AVATPVIAVDGKIRLYEVLALAKVPNNANFFKSYVVREGKQLPIDIYKLMNLGDMSQNIVMRGGDRIFIAAPSDSTVMVM GEVGHPMAVNLPYGFMSLRQALVSAGGIPFTGNRDCIQVIRGNLQNPKIYVLSWNHIIHLPNDSLLLMPGDTVYVSEKPI TQWNRFIDQLLPSCLGVQAAYGTYRLFRN
Sequences:
>Translated_349_residues MMKYLAFCLLSLLFFLSSCSTPCHNYDVFGADEFVIDSYKIRQGKLAILDMEGSDVKELDCDAMEEYQDVISEDDILNIA IYHPKRRDVMDAIQFINATIGFRVSEGRVDFPDIPSVEVAGLSLEEARQKIQLCYQEQIQDVEVFLNYRNRLSRKVELTG AVATPVIAVDGKIRLYEVLALAKVPNNANFFKSYVVREGKQLPIDIYKLMNLGDMSQNIVMRGGDRIFIAAPSDSTVMVM GEVGHPMAVNLPYGFMSLRQALVSAGGIPFTGNRDCIQVIRGNLQNPKIYVLSWNHIIHLPNDSLLLMPGDTVYVSEKPI TQWNRFIDQLLPSCLGVQAAYGTYRLFRN >Mature_349_residues MMKYLAFCLLSLLFFLSSCSTPCHNYDVFGADEFVIDSYKIRQGKLAILDMEGSDVKELDCDAMEEYQDVISEDDILNIA IYHPKRRDVMDAIQFINATIGFRVSEGRVDFPDIPSVEVAGLSLEEARQKIQLCYQEQIQDVEVFLNYRNRLSRKVELTG AVATPVIAVDGKIRLYEVLALAKVPNNANFFKSYVVREGKQLPIDIYKLMNLGDMSQNIVMRGGDRIFIAAPSDSTVMVM GEVGHPMAVNLPYGFMSLRQALVSAGGIPFTGNRDCIQVIRGNLQNPKIYVLSWNHIIHLPNDSLLLMPGDTVYVSEKPI TQWNRFIDQLLPSCLGVQAAYGTYRLFRN
Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BexD/CtrA/VexA family [H]
Homologues:
Organism=Escherichia coli, GI1788376, Length=296, Percent_Identity=28.0405405405405, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1787218, Length=311, Percent_Identity=27.0096463022508, Blast_Score=90, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 - InterPro: IPR019554 [H]
Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 39344; Mature: 39344
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKYLAFCLLSLLFFLSSCSTPCHNYDVFGADEFVIDSYKIRQGKLAILDMEGSDVKELD CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECEEECCCCEEEEECCCCCCCCCC CDAMEEYQDVISEDDILNIAIYHPKRRDVMDAIQFINATIGFRVSEGRVDFPDIPSVEVA HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEE GLSLEEARQKIQLCYQEQIQDVEVFLNYRNRLSRKVELTGAVATPVIAVDGKIRLYEVLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCEEHHHHHH LAKVPNNANFFKSYVVREGKQLPIDIYKLMNLGDMSQNIVMRGGDRIFIAAPSDSTVMVM HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCEEEEE GEVGHPMAVNLPYGFMSLRQALVSAGGIPFTGNRDCIQVIRGNLQNPKIYVLSWNHIIHL ECCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECEEEEC PNDSLLLMPGDTVYVSEKPITQWNRFIDQLLPSCLGVQAAYGTYRLFRN CCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure MMKYLAFCLLSLLFFLSSCSTPCHNYDVFGADEFVIDSYKIRQGKLAILDMEGSDVKELD CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECEEECCCCEEEEECCCCCCCCCC CDAMEEYQDVISEDDILNIAIYHPKRRDVMDAIQFINATIGFRVSEGRVDFPDIPSVEVA HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEE GLSLEEARQKIQLCYQEQIQDVEVFLNYRNRLSRKVELTGAVATPVIAVDGKIRLYEVLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCEEHHHHHH LAKVPNNANFFKSYVVREGKQLPIDIYKLMNLGDMSQNIVMRGGDRIFIAAPSDSTVMVM HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCEEEEE GEVGHPMAVNLPYGFMSLRQALVSAGGIPFTGNRDCIQVIRGNLQNPKIYVLSWNHIIHL ECCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECEEEEC PNDSLLLMPGDTVYVSEKPITQWNRFIDQLLPSCLGVQAAYGTYRLFRN CCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7596293 [H]