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The map label for this gene is yjbC [C]

Identifier: 46445794

GI number: 46445794

Start: 239506

End: 240210

Strand: Reverse

Name: yjbC [C]

Synonym: pc0160

Alternate gene names: 46445794

Gene position: 240210-239506 (Counterclockwise)

Preceding gene: 46445798

Following gene: 46445793

Centisome position: 9.95

GC content: 34.33

Gene sequence:

>705_bases
GTGGAAACAAATCGATTAAGTAAAGTATTAGCTGCCGCAGGAATTGCTTCACGAAGAGCTTGTGAAGAATTGATTTTTCA
AGGTCTCGTAAAAGTTAATGGGGAAGTCATTAAAGTTCCTCAAACAAAAGTTAATCCCGAAATCGATACAATTACTGTAC
GGGATGAAGTAATTAATAGAAAAGAAGACAAAGTTTACTACTTACTAAATAAACCTCCTGGTTATATCTGTTCAGCACGA
AAAAGTGGTCAAACAAAAATTATATTAGATCTTTTTCAAGATGAGGACCACAGACTTTTTACTGTGGGAAGATTAGATAA
AGATACGCAAGGCCTACTCATTGTCACAAATGATGGCCACTTTGCAAATCAAATTATTCACCCTTCTGCCAATATTCAAA
AAGAATATTTAGCAAAAACAGATCAAGAAATTTCTCATGAACATCTGATTGCTATTGCCAATGGAACTCTTGTAGAAGGA
GTATTTGTAAAACCGATTAGAGTTCAAAAAGTACGTAAAGGAACCATTAAAATCATTATTGGAGAGGGAAAAAAACGAGA
AGTGAGAATGCTTTTAAGTGCTGCAGGTTTAAAAGTACAAGAGCTTACACGTATTCGACTTGGTGGTTTACATTTAGGTC
GCTTGCCAATTGGAAATTGGCGTCCCTTAACTGAAACTGAAAAAAAATCTATTTTTTCTAACTAA

Upstream 100 bases:

>100_bases
AGACGATTCAGTTTTATTCAATGTAATAGATCATTTTCTATAGGATTCATCTGAATCTAAAATTCAGATATCATCTTATT
AACTATTAGTCAGGACTTTT

Downstream 100 bases:

>100_bases
AATACTATGAAATCAAATAAATTACCCTCTACAGATTTCGAAACAGTGATGCCGCTGCTTATTAATGCTTGGCGTCGTTT
TCATAAATTATCTGGCCCAG

Product: putative ribosomal large chain pseudouridine synthase B

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
METNRLSKVLAAAGIASRRACEELIFQGLVKVNGEVIKVPQTKVNPEIDTITVRDEVINRKEDKVYYLLNKPPGYICSAR
KSGQTKIILDLFQDEDHRLFTVGRLDKDTQGLLIVTNDGHFANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTLVEG
VFVKPIRVQKVRKGTIKIIIGEGKKREVRMLLSAAGLKVQELTRIRLGGLHLGRLPIGNWRPLTETEKKSIFSN

Sequences:

>Translated_234_residues
METNRLSKVLAAAGIASRRACEELIFQGLVKVNGEVIKVPQTKVNPEIDTITVRDEVINRKEDKVYYLLNKPPGYICSAR
KSGQTKIILDLFQDEDHRLFTVGRLDKDTQGLLIVTNDGHFANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTLVEG
VFVKPIRVQKVRKGTIKIIIGEGKKREVRMLLSAAGLKVQELTRIRLGGLHLGRLPIGNWRPLTETEKKSIFSN
>Mature_234_residues
METNRLSKVLAAAGIASRRACEELIFQGLVKVNGEVIKVPQTKVNPEIDTITVRDEVINRKEDKVYYLLNKPPGYICSAR
KSGQTKIILDLFQDEDHRLFTVGRLDKDTQGLLIVTNDGHFANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTLVEG
VFVKPIRVQKVRKGTIKIIIGEGKKREVRMLLSAAGLKVQELTRIRLGGLHLGRLPIGNWRPLTETEKKSIFSN

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=230, Percent_Identity=34.3478260869565, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788510, Length=230, Percent_Identity=30.4347826086957, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787524, Length=234, Percent_Identity=32.0512820512821, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87081838, Length=168, Percent_Identity=27.9761904761905, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26248; Mature: 26248

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METNRLSKVLAAAGIASRRACEELIFQGLVKVNGEVIKVPQTKVNPEIDTITVRDEVINR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEHHHHCC
KEDKVYYLLNKPPGYICSARKSGQTKIILDLFQDEDHRLFTVGRLDKDTQGLLIVTNDGH
CCCEEEEEEECCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCC
FANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTLVEGVFVKPIRVQKVRKGTIKIII
HHHEEECCCCCCCHHHHHHCCCCCCCEEEEEEECCCEECCEEECCCEEEEECCCEEEEEE
GEGKKREVRMLLSAAGLKVQELTRIRLGGLHLGRLPIGNWRPLTETEKKSIFSN
CCCCCHHHHHHHHHCCCCHHHHHHHEECCEEECCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
METNRLSKVLAAAGIASRRACEELIFQGLVKVNGEVIKVPQTKVNPEIDTITVRDEVINR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEHHHHCC
KEDKVYYLLNKPPGYICSARKSGQTKIILDLFQDEDHRLFTVGRLDKDTQGLLIVTNDGH
CCCEEEEEEECCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCC
FANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTLVEGVFVKPIRVQKVRKGTIKIII
HHHEEECCCCCCCHHHHHHCCCCCCCEEEEEEECCCEECCEEECCCEEEEECCCEEEEEE
GEGKKREVRMLLSAAGLKVQELTRIRLGGLHLGRLPIGNWRPLTETEKKSIFSN
CCCCCHHHHHHHHHCCCCHHHHHHHEECCEEECCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]